Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2338 ATGAGTTTGTTCCATGTAGTTGGGTTTGGTCTAAAAGTGGGGCATCTACTTTTGGTGCTATGTTGCTGGGTTGTGTCTGTCGTTTACCATAACTGGTTTATTAGCAGTGGAATTATGGACACCAAGATGGGTTTTCCAGGTGCTGGTGGTGGCAAGATGTGGCACAAATGGTGGGAGAAGATCTCAGGGCAGGGTTGCAAAATCCACCAACTGTACTACCAGTATATTGGGTctaagaaagtgaagagagcgTTGGGGAGGAAGTTTTTGCTGACATGGGTGGTGGGTTGGACCATAGTATCATTGTGGATCTTCTGCTACATGAGCTTGCAAGGTACTGAGAAGAGGAAAGAAACTCTGGCAAGCATGTGTGATGAAAGGGCTAGGGTGCTGCAGGATCAGTTTAATGTCAGTATGAACCATATCCAAGCCATGTCCATTCTGATCTCGACCTTCCACCATGCCACGAACCCCTCAGCCATCGATCAGAAAATTTTTGCCAGGTACACAGAAAGAACAGCTTTTGAGCGGCCTCTTATAAGTGGTGTTGCATATGCTGTAAGGGTGCTCCATTCTGAAAGGGAACAATTTGAAGAGCAACAAGGTTGGACCATCAAGAGGATGGATACTCTAGAGCAGAACCCAGTTCATAAGGACGATTATGCCCCAGAGGCATTGGAGCCATCCCCCGTTCATGAAGAATATGCTCCTGTCATTTTTGCACAGGATACAATTGCACATGTGATTTCTGTTAATGTGCTTTCTGGAAAGGAAGACCGTGACAATGTGCTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCGCCCTTCAGGCTGCTCAAAACAAATCGGCTAGGGGTTATCCTGACATTTGCTGTCTACAAGAGAGATCTTCCATCAAATGCAACCCCAAATGAAAGGATTCAAGCAACTAATGGGTATCTTGGGGGAGTGTTTGATGTTGAGTCATTAGTGGAGAAATTACTTCAGCAACTTTCTAGCAAGCAAACTGTAATTGTTAATGTGTATGATACTACAAATCATACTCATCCAATTGCCATGTATGGCTCAAATGAATCAGGGGATGTGTTCCATCACGTCAGCACTCTTAACTTCGGAGACCCTTTTAGGAAGCATGAGATGCACTGCAGGTTCAAGCAGAAACCAACATGGCCATGGTTGGCAATAACTACTTCAATTGGTATCCTTGTTATTGCACTCCTTGTTGGACATATTTTCCATGCCACTGTGAATCGAATTGCCAAAGTAGAAGATGATTACCGTGAGATGATGGAACTTAAAAAACGAGCTGAGGCAGCTGATATTGCAAAATCCCAGTTTCTTGCTACTGTTTCCCACGAGATCAGAACACCAATGAATGGTGTTTTAGGGATGATGCATATGCTTATGGACACAGATCTAGATGTAACCCAACAGGAATATGTCAGGACAGCACAGGAAAGTGGAAAAGCTCTGGTGTTACTTATAAATGAGGTTTTGGATCAGGCTAAGATTGAATTTGGTAAGCTAGAGCTTGAGGCTGTGCTCTTTGACATACGGGCAATTTTGGATGATGTATTGTCCCTATTTTCTGAGAAGTCTCAAGGAAAAGGAGTAGAGTTGGCAGTTTATGTGTCAGATCAGGTTCCAGAATTGCTAATAGGTGATCCAGGAAGATTTCGACAAATAATTACCAATCTCATGGGTAACTCAATGAAGTTCACTGAGAAAGGACATATTTTTGTCACTATCCAACTTGTTGAGGAGGTTGTCCATTCAATAGAGGTTGACGAAGAATCCAACTCAGAAAATACCTTGAGTGGTTCCCCTGTTGCTGATAGTCGCCAGAGCTGGGAAGCATTCAAGGCTTTCAGTCAAAAGGGACCTCTCGGTTCTTTCTCTTCCCCCTCCAGTAATCTTGTCAATTTGATTGTATCTGTTGAGGATACAGGTGAAGGTATTCCTCCAGAAGCCCAGCCCCTCGTCTTCACCCCATTCATGCAGGTAGGTTCATCCATCTCCCGAAAGCATGGGGGAACAGGTATTGGCCTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGAGAAATTGGATTTGTGAGCTTACCCAAGATTGGATCCACATTCACTTTTACTGCTGTATTCACCAATGGACACCACAGTTCAAATGAGTCTAAAATTCAACAAATCAACAACCAACCTCAGTCTGCATCTTCAGAATTTGAGGGGAAGACTGCATTAATTATTGACCCAAGACCTATTAGAGCAAAAGTGTCTAGATATCACATCCGACGGCTTGGCATTCATGTTGAGATGATTTCAGATTTAGACCAAGGTCTGTCAATCATAAGCAATGGGaatatagttattaatataGTCTTGATTGAGCAGGAGGTTTGGGATAGAGATTTAGGCTTGTCATCTCACTTTGTCAATAACACAATGAAAGTTGATCGTGGGGTTCCTCCAAAGCTGTTCATTCTTGTTAATTCTAGTAGTTCTTTTAAAGCAAGTAGTGAAGACTTGGGTGTTCATAATCCTACTGTCATCACCAAACCTCTGAGAGCAAGTATGCTTGCTGCCTCACTACAACGAGCTCTGGGTGTCCCTGGACCTTCTCGAAATAGTAAGCTTCAAAGTTCATTTCTTCGCCAGCTTCTTCGTGGCAGGAAAATTCTAATTGTAGACGACAATAGTGTGAACCGTGTGGTAGCAGATGGTGCATTGAAAAAGTATGGAGCAGATGTGGTTTGTGTTAGCAGTGGAAAAGATGCCATCTCTTCCCTGAAGCCACCCCATCAGTTTGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGACGGTTTTGAAGCTACAAAGCGAATTAGGGAGATGGAAGCCAGTGTTAACAGAGAAGTATCTATGGATGACTCTGAGAATATCACAAAATGGCATGTACCCATTTTAGCCATGACTGCAGATGTGATACAGGCTACACACGATGAATGCACAAGGTATGGCATGGACGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTCTACAGAGAAGTCTCACGGTTTTTCTAG 3078 0.4285 MSLFHVVGFGLKVGHLLLVLCCWVVSVVYHNWFISSGIMDTKMGFPGAGGGKMWHKWWEKISGQGCKIHQLYYQYIGSKKVKRALGRKFLLTWVVGWTIVSLWIFCYMSLQGTEKRKETLASMCDERARVLQDQFNVSMNHIQAMSILISTFHHATNPSAIDQKIFARYTERTAFERPLISGVAYAVRVLHSEREQFEEQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPVHEEYAPVIFAQDTIAHVISVNVLSGKEDRDNVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQATNGYLGGVFDVESLVEKLLQQLSSKQTVIVNVYDTTNHTHPIAMYGSNESGDVFHHVSTLNFGDPFRKHEMHCRFKQKPTWPWLAITTSIGILVIALLVGHIFHATVNRIAKVEDDYREMMELKKRAEAADIAKSQFLATVSHEIRTPMNGVLGMMHMLMDTDLDVTQQEYVRTAQESGKALVLLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKGVELAVYVSDQVPELLIGDPGRFRQIITNLMGNSMKFTEKGHIFVTIQLVEEVVHSIEVDEESNSENTLSGSPVADSRQSWEAFKAFSQKGPLGSFSSPSSNLVNLIVSVEDTGEGIPPEAQPLVFTPFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEIGFVSLPKIGSTFTFTAVFTNGHHSSNESKIQQINNQPQSASSEFEGKTALIIDPRPIRAKVSRYHIRRLGIHVEMISDLDQGLSIISNGNIVINIVLIEQEVWDRDLGLSSHFVNNTMKVDRGVPPKLFILVNSSSSFKASSEDLGVHNPTVITKPLRASMLAASLQRALGVPGPSRNSKLQSSFLRQLLRGRKILIVDDNSVNRVVADGALKKYGADVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGFEATKRIREMEASVNREVSMDDSENITKWHVPILAMTADVIQATHDECTRYGMDGYVSKPFEAEQLYREVSRFF 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2338 1025 CDD HisKA 444 505 IPR003661 GO:0000155|GO:0007165
Ssu5g2338 1025 CDD PRTases_typeI 843 921 IPR000836 -
Ssu5g2338 1025 SUPERFAMILY CheY-like 890 1023 IPR011006 -
Ssu5g2338 1025 Pfam Response regulator receiver domain 894 1020 IPR001789 GO:0000160
Ssu5g2338 1025 SMART HisKA_10 444 509 IPR003661 GO:0000155|GO:0007165
Ssu5g2338 1025 Pfam His Kinase A (phospho-acceptor) domain 444 507 IPR003661 GO:0000155|GO:0007165
Ssu5g2338 1025 Gene3D CHASE domain 161 390 IPR042240 -
Ssu5g2338 1025 PANTHER HISTIDINE KINASE 3 57 1025 - -
Ssu5g2338 1025 Gene3D - 508 720 IPR036890 -
Ssu5g2338 1025 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 556 717 IPR003594 -
Ssu5g2338 1025 CDD HATPase_EvgS-ArcB-TorS-like 561 717 - -
Ssu5g2338 1025 PRINTS Bacterial sensor protein C-terminal signature 679 697 IPR004358 GO:0016310|GO:0016772
Ssu5g2338 1025 PRINTS Bacterial sensor protein C-terminal signature 662 672 IPR004358 GO:0016310|GO:0016772
Ssu5g2338 1025 PRINTS Bacterial sensor protein C-terminal signature 644 658 IPR004358 GO:0016310|GO:0016772
Ssu5g2338 1025 PANTHER TWO-COMPONENT HISTIDINE KINASE 57 1025 - -
Ssu5g2338 1025 Gene3D - 412 507 - -
Ssu5g2338 1025 SUPERFAMILY CheY-like 743 870 IPR011006 -
Ssu5g2338 1025 SMART CHASE_2 157 358 IPR006189 -
Ssu5g2338 1025 Pfam CHASE domain 160 356 IPR006189 -
Ssu5g2338 1025 CDD REC_hyHK_CKI1_RcsC-like 894 1021 - -
Ssu5g2338 1025 SMART HKATPase_4 556 719 IPR003594 -
Ssu5g2338 1025 Gene3D - 887 1025 - -
Ssu5g2338 1025 Gene3D - 108 160 - -
Ssu5g2338 1025 Coils Coil 421 441 - -
Ssu5g2338 1025 ProSiteProfiles CHASE domain profile. 157 383 IPR006189 -
Ssu5g2338 1025 ProSiteProfiles Response regulatory domain profile. 893 1025 IPR001789 GO:0000160
Ssu5g2338 1025 SMART REC_2 892 1021 IPR001789 GO:0000160
Ssu5g2338 1025 ProSiteProfiles Histidine kinase domain profile. 451 719 IPR005467 -
Ssu5g2338 1025 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 498 714 IPR036890 -
Ssu5g2338 1025 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 429 510 IPR036097 GO:0000155|GO:0007165
Ssu5g2338 1025 ProSiteProfiles Response regulatory domain profile. 747 869 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2338 Ssu-Chr5 66019620 66027337 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2338 1 1025 Miscellaneous Gene Families AT1G27320 67.273 0.0 1382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu5g2338 CHASE 5.6e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2338 K14489 - gmx:100801546 1824.29