Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2333 ATGGAGTGGAATGCAAAATCTCCCCCACAGTGGGAGTGGGAGCAACTATTCTTCAGTACAAAGCCAacagaaaattcaaaattacaatcaCCGAACTGGAGTGGTGAAGCAAACCAAGAAATCAATTTTGAGTTGTTCGATGCTTCTGGTGGTGGTTGTTCTGGGTCAGAGCTAATACATGCTTCTTCATCAAGGACCTCAAAATCAGCCTCTATCAATTCATCATCAAATATGGGTAGCAAAACATCTATATTCACTTTTGAAAGTTCACAAGATGATTCCAGTGAGCCCTCTTCTGTCTCTGGTGAACCATTGCTCACTCTAAAGCTTGGTAAACGGTTGTACTTTGAGGATGTTTGCCCGGCAAGTGATTCCAAGAACCTATCTTTTTCTAAGGATCCCGTGTCATCTTTAAGTACTGGAAAGAAATGCAAGTCCAATGGTCAGAGCGTACAATATCCATGTTGCCAGGTTGAAGGCTGTGGCCTTGACCTTTCATCAGCTAAAGATTACCACCGCAAACATAGAGTTTGTGAAAGTCATTCCAAATCCCCTAAAGTGGTTGTAGCTGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATAGTCTGTTAGAGTTTGATGAGAAAAAGAGAAGCTGCAGACGACGTCTTTCCGATCACAATGCAAGGCGCCGTAAACCTCTTCCTCAAGCTATACAATCAAGTCAATCAGCTTTGTCTTCAGTACTCTACGAGAGGAGACAACAGATGAGCCCATTCGCTCATTCTAGGACTGCTACGAATATAGCCTGTCAAGACATACACAGCAGCAAGCTTCCCCAGACAAAAGATTTTCTCATGAAGCCTGCAAAGGCCAATACTGAGATACCAAGTGTGGAAGATTCCATTAATTCCTCTGATCCAAATGCTACAAAAGATTTTCACCGTGCTCCCTCTCTTCTGTCAACCAATTCATGGGGTTCATATGAGGCTAAATCCATTTCTCTAGAACAATCCGATCACACAACCAGTGCCACTCAGCCTGCAACACATGTAGTGAGTCAGCACTTACCTCTTGCTTCATCAGAATATTGGCACACTGATCAACCACTTAATTCCAGCATGTGGATCAACAATCGCTTTCATGAATTTCAACTGTTCAGAGAACCTTATGAGTCTGGTTTTCCCTACAACCAATTGGATTAA 1194 0.4238 MEWNAKSPPQWEWEQLFFSTKPTENSKLQSPNWSGEANQEINFELFDASGGGCSGSELIHASSSRTSKSASINSSSNMGSKTSIFTFESSQDDSSEPSSVSGEPLLTLKLGKRLYFEDVCPASDSKNLSFSKDPVSSLSTGKKCKSNGQSVQYPCCQVEGCGLDLSSAKDYHRKHRVCESHSKSPKVVVAGLERRFCQQCSRFHSLLEFDEKKRSCRRRLSDHNARRRKPLPQAIQSSQSALSSVLYERRQQMSPFAHSRTATNIACQDIHSSKLPQTKDFLMKPAKANTEIPSVEDSINSSDPNATKDFHRAPSLLSTNSWGSYEAKSISLEQSDHTTSATQPATHVVSQHLPLASSEYWHTDQPLNSSMWINNRFHEFQLFREPYESGFPYNQLD 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2333 397 MobiDBLite consensus disorder prediction 292 311 - -
Ssu5g2333 397 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 294 396 - -
Ssu5g2333 397 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 20 289 - -
Ssu5g2333 397 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 294 396 IPR044817 GO:0003677
Ssu5g2333 397 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 289 IPR044817 GO:0003677
Ssu5g2333 397 Gene3D - 146 217 IPR036893 GO:0003677|GO:0005634
Ssu5g2333 397 MobiDBLite consensus disorder prediction 57 78 - -
Ssu5g2333 397 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677|GO:0005634
Ssu5g2333 397 Pfam SBP domain 156 229 IPR004333 GO:0003677
Ssu5g2333 397 MobiDBLite consensus disorder prediction 293 311 - -
Ssu5g2333 397 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2333 Ssu-Chr5 65959573 65962412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2333 1 366 SBP-box Gene Family AT5G43270 39.259 1.65e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu5g2333 SBP 2.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2333 - - gmx:100781289 449.129