Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2321 ATGGACACCTCCTTCGATCATGTTTGTTCTGCGAATCGGCACAAACAGCAACCCCATCAAGCCCCGATGCatcaaaattatTACATCTTTGAAACGAGTGGCTATCCCAAAAAGCACGAGCAATTGAAGCAACTCAGAGAGACAACAGTGCAGAAATACGGGAACAAGAGTGTGATGAATGTGCCAGTGGATGAAGCCCAGTTCATATCTATTCTTCTAAAAGTCATGAAAGCGAAGAAAACACTAGAAATTGGAGTTTTTACCGATAATAGATTGATGTCGATAGAGAAGCGTACGAAACTGGATTGCCCTTCATTCAAAAGGCAGGAGTGGAGCACAAAATTGACTTTATCCAAGCGGATGCATTATCAGCTCTCCATGATCTAA 387 0.4186 MDTSFDHVCSANRHKQQPHQAPMHQNYYIFETSGYPKKHEQLKQLRETTVQKYGNKSVMNVPVDEAQFISILLKVMKAKKTLEIGVFTDNRLMSIEKRTKLDCPSFKRQEWSTKLTLSKRMHYQLSMI 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2321 128 Gene3D Vaccinia Virus protein VP39 8 88 IPR029063 -
Ssu5g2321 128 PANTHER O-METHYLTRANSFERASE-RELATED 27 93 - -
Ssu5g2321 128 Pfam O-methyltransferase 31 92 IPR002935 GO:0008171
Ssu5g2321 128 PANTHER FLAVONOID 3',5'-METHYLTRANSFERASE-LIKE 27 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2321 Ssu-Chr5 65707588 65709382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2321 28 95 Monolignol Biosynthesis Gene Families AT1G67990 57.353 5.88e-24 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2321 K00588 K13272 gmx:100813350 109.383