Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2320 ATGTTGAGTGGAAACATGTTGAATGGCTCAGTAACCAGGAACATCCTCCGGAGTTCAGAACTTCTtaagTACATCCTTGAAACGAGTGCCTATCCACAAGAACATGAACAATTAAAGCAACTCAGAGAGATCACCGTGCAGAAGTATCCAAGTATCTGGGATTATATGATGAATGTACCAGTGGATGAAGCGCAGTTCATATCTATTCTTCTTAAAATCATGAATGCGAAGAAAACACTAGAAGTTGGAGTATTCACTGGTTATTCTCTTCTTGCTACAGCTCTTGCTCTACCTCATGATGGCAAGATAACGGCAATTGATGTGAATAGAGATGCATACGAGATTGGATTACCCTTCATTCAGAAGGCAGGAGTGGAGCACAAAATTGACTTTATCCATAGTGATGCACTATCAGTCCTCAATAATCTTATTCATGATGAACAAAAAGAATCATTTGATTATGCATTTGTGGACGCGGACAAAGAAGAATACATAAAGTATCACGAGCTTCTGTTAAAATTGGTGAAGAAGGGTGGAATAATTGCATACGACAATACCCTATGGCTAGGTTCAGTGGCAATGTCTGAGGAAGATGTAAAGGAAGAAATCATAAGGAAGAGAAGAAAGCCTGTGATTGAATTCAACAGTTTTATTGCAAACGATTCTCGCCTAGAATCAATTATCCTTTCTGTCGGGGATGGCGTAACCCTTTGTAGACGTGTGTGA 726 0.3939 MLSGNMLNGSVTRNILRSSELLKYILETSAYPQEHEQLKQLREITVQKYPSIWDYMMNVPVDEAQFISILLKIMNAKKTLEVGVFTGYSLLATALALPHDGKITAIDVNRDAYEIGLPFIQKAGVEHKIDFIHSDALSVLNNLIHDEQKESFDYAFVDADKEEYIKYHELLLKLVKKGGIIAYDNTLWLGSVAMSEEDVKEEIIRKRRKPVIEFNSFIANDSRLESIILSVGDGVTLCRRV 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2320 241 Pfam O-methyltransferase 27 241 IPR002935 GO:0008171
Ssu5g2320 241 Gene3D Vaccinia Virus protein VP39 6 241 IPR029063 -
Ssu5g2320 241 PANTHER O-METHYLTRANSFERASE-RELATED 11 241 - -
Ssu5g2320 241 PANTHER FLAVONOID 3',5'-METHYLTRANSFERASE-LIKE 11 241 - -
Ssu5g2320 241 CDD AdoMet_MTases 80 183 - -
Ssu5g2320 241 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 17 240 IPR029063 -
Ssu5g2320 241 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 14 241 IPR002935 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2320 Ssu-Chr5 65673143 65689301 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2320 13 241 Monolignol Biosynthesis Gene Families AT1G67990 54.585 2.70e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2320 K00588 K13272 gmx:100500657 362.073