Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2317 ATGACGGGTGACTCACCACAAAAGAACATTCTCCAGAGTCCAGCACTTCTTaagTACGTCCTTGAAACGAGTGCCTATCCAAAAGAGCACGAACAATTAAAACAACTCAGAGAGACCACCGCACAGAAGTGCCAGGAAAATTGGGATTATTTGATGAATGTGCCGGTGGATGAAGCGCAATTCATATCTATTCTTCTTAAAATCATGAATGCGAAGAAAACACTGGAGATTGGAGTATTCACTGGTTATTCTCTTCTTGCTACAGCTCTTGCTCTGCCGCACGATGGCAAGATAACGGCAATTGATGTGGATAGAAAAGCATATGAGATTGGATTGCCATTCATTCGAAAGGCAGGAATGGagcacaaaattgattttatcctTGGTGATGCATCATCAGTCCTCAATGATCTTATTAAtGACAAACATGAAGAATCATTTGATTATGTATTTGTGGATGCGGAGAAAGAAGAATACATAAAATATCACGAGCTGCTGATAAAATTGGTGAAAAAGGGTGGAATAATTGCATATGACAATACCTTATGGTGTGGTACAGTGGCAATGCCTGAGGAAGATATAAAGATGGATATCCTACGAAAGAAAAGAAAGCCTTTGCTTGAATTCAACAGCTTTATAGCAAACGATTCTCGCTTGGAATCAGCTATCATTTCGATTGGGGATGGTGTAACCCTCTGTAGACGGTTGTGA 711 0.391 MTGDSPQKNILQSPALLKYVLETSAYPKEHEQLKQLRETTAQKCQENWDYLMNVPVDEAQFISILLKIMNAKKTLEIGVFTGYSLLATALALPHDGKITAIDVDRKAYEIGLPFIRKAGMEHKIDFILGDASSVLNDLINDKHEESFDYVFVDAEKEEYIKYHELLIKLVKKGGIIAYDNTLWCGTVAMPEEDIKMDILRKKRKPLLEFNSFIANDSRLESAIISIGDGVTLCRRL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2317 236 Gene3D Vaccinia Virus protein VP39 2 236 IPR029063 -
Ssu5g2317 236 Pfam O-methyltransferase 22 236 IPR002935 GO:0008171
Ssu5g2317 236 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 9 236 IPR002935 GO:0008171
Ssu5g2317 236 PANTHER FLAVONOID 3',5'-METHYLTRANSFERASE-LIKE 6 236 - -
Ssu5g2317 236 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 14 235 IPR029063 -
Ssu5g2317 236 CDD AdoMet_MTases 75 178 - -
Ssu5g2317 236 PANTHER O-METHYLTRANSFERASE-RELATED 6 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2317 Ssu-Chr5 65639206 65642800 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2317 1 236 Monolignol Biosynthesis Gene Families AT1G67990 55.508 2.12e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2317 K00588 K13272 gmx:100500657 410.994