Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2314 ATGGTGAAGTACTCGAGAGAGCCTGACAATCCCACCAAGTCTTGCAAGGCCAGAGGCGCCGACCTTAGGGTTCATTTTAAGAACACCAGGGAAACTGCCCATGCAATCCGCAAGTTGCCCTTGGGAAAGGCAAAAAGGTACTTGGAAGATGTTCTTGCCCACAAACAGGCCATTCCATTCAGACGTTTCTGTCGTGGCGTTGGGAGGACAGCCCAAGCAAAGAATAGACACTCTAATGGCCAAGGACGGTGGCCTGTAAAATCAGCAAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGCGCTGTACGTTTCTCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACCGTGCCCATGGAAGAATCAATCCGTACATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAGGAAGAGCCTGTCAAGAGGAGGTATTTGATTCATCTGGTTGTTTTGATTCCCCTATTTCTTCGATAA 528 0.4621 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAHAIRKLPLGKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKRRYLIHLVVLIPLFLR 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2314 175 PANTHER 60S RIBOSOMAL PROTEIN L17 1 161 IPR005721 GO:0003735|GO:0006412|GO:0015934
Ssu5g2314 175 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Ssu5g2314 175 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 161 - -
Ssu5g2314 175 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Ssu5g2314 175 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Ssu5g2314 175 Gene3D Ribosomal protein L22/L17 1 163 IPR036394 GO:0003735|GO:0005840|GO:0006412
Ssu5g2314 175 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Ssu5g2314 175 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Ssu5g2314 175 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2314 Ssu-Chr5 65556773 65559839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2314 1 160 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 91.875 4.38e-112 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2314 K02880 - jre:109003161 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1808 9 55413703 55415543 Ssu5g2314 5 65556773 65559839 PCT