Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2307 ATGATGGATGTTGCTGAGGTTGAAGAAAATCTATTTGCCGCAAGTGATGCCAAGTTACATGGACAAATGTGCAAGACTCTTTCTATAATATATTGCAAAGTATTGTCTGTATTCCCTTCTTTAGAAGCTGCTAGGCCTAGGAGTAAATCTGGTATTCAGGCATTATGTTCATTGCATATAGCCTTGGAGAAAGTCAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCCATAACCGGAGATTCtgtccttctaaaatttgagAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGACGGGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGGTTCAGGAGATTGTGAATGAATTTGTGACAATAGAATTTGCACTTGACCCATCAGAGAAGCAAGTTGGTGATGATTTAATTGCATTGCTCCAACAGGGAAGAAAGTTTAATGATTCTAATGACAGCAATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATCACATCTTCAAGAGCAGCTCTTACTGAAAGGAGAGCTCTCAAGAAACTCATAGAAAGGGCTCGAACTGAGGAAGACAAGCGGAAGGAATCAATTGTTGCATATCTTTTACATCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCAGATGACAACGATTCTCAGGGTTCTACACCCTGTTCGCCCACTGTTCAGGGATCTATTGAGGATAGTGTTCCTGGTAGTCATTCTCAAGCCTTTGACAGACAGCTTTCAAAATTCAGTTGCTTtaatttcaaaccaaataaTAGTAGCAAATCAGGGCAGTTGCCTCTTCCACCTGAAGAGTTAAGGTGCCCAATATCTCTGCAACTTATGTACGATCCTGTTATCATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAGAAATGGTTCAGTGATGGGCACAACAACTGCCCAAAGACCCAACAGGAACTTTCACATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGCCTTGTTGCTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGAATGCCCTCCTGAATCTCTTGATCTGAACTACTGGGGATTGGTACTATCAGAGTCTGAATCTACAAATTCAAAATCTGTAAATAGTGTCAGGTCTTGCAAGTTGAAGGGTGTCCAAGAGGTTCCTTTAGAAGAGAGTGGTATCTCAGAGGAATCTGTGGAAAATGGAACTGAAAGTGTGTCTGCACAAGAGGAAGATACTGAGCAGTATTTTAGTTTTCTGAAAGTCTTGACTGAGGGGAACAATTGGATGAGGCAATGTGAAGTGGTAGAACAGTTAAGGCTGTTGCTGAGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGGTTTGTTGAAGCACTTTTGCAGTTTTTGCAATCAGCTGTGTGTGAAGGTAATTTGATGGCTCTGGAAAGTGGAGCAATGGCCCTCTTCAACCTGGCTGTGAATAATAACAGAAATAAGGAAATTATGTTATCGGCTGGAGTATTATCATTGTTGGAGGAAATGATTTCTAAAACTAGTTCTTATGGTTGTCCAACTGCTCTTTATTTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGCATGAGTCAGGCTGTCCTGTTCCTAATCCAGCTTCTTCAATCTGACTCTGATGTTCAATGCAAGCAAGATTCTCTTCATGCTCTCTATAATCTTTCTACTGTGCCCTCCAATATTCCATACCTCCTTTCATCTGGCATCATTAGTGGCTTACAATCCCTTCTTGTAGGCGATGGTGATTGCAGCATGTGGACAGAAAAATGCATAGCTGTTTTGATAAATGTAGCTACTTCTGAAGTTGGAAGGGAGGAAATTGTATCAACTTCTGCACTAATTAGTGCATTGGCTTCAATATTGGATACTGGTGAGCTCTTAGAACAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTGTGCAATAAAAGTGAGACATGTAGTGAGATGGTCCTGCAAGAAGGGGTTATACCAGCATTGGTTTCAATATCCGTGAATGGGACCCCAAGAGGTAGAGAAAAAGCTCAGAAACTCTTGATGCTGTTCCGAGAGCAACGACGAGACCCTTCACCAGTTAAGACACATCAATGCCCACCTGAAACTAGTGATTTGTCTACGCCGCCTGCTGAAATGAATCCGCTATGCAAGTCGGTTTCGAGAAGAAAGTCTGGGAAAGCTTTTAGCTTTATCTGGAAAAGCAAAAGCTATTTTGTTTACCAGTGTTAA 2301 0.4076 MMDVAEVEENLFAASDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHIALEKVKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFVTIEFALDPSEKQVGDDLIALLQQGRKFNDSNDSNELESFHQAATRLGITSSRAALTERRALKKLIERARTEEDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSTPCSPTVQGSIEDSVPGSHSQAFDRQLSKFSCFNFKPNNSSKSGQLPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQELSHLCLTPNYCVKGLVASWCEQNGVPIPECPPESLDLNYWGLVLSESESTNSKSVNSVRSCKLKGVQEVPLEESGISEESVENGTESVSAQEEDTEQYFSFLKVLTEGNNWMRQCEVVEQLRLLLRDDEEARIFMGANGFVEALLQFLQSAVCEGNLMALESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGCPTALYLNLSCLEEAKPMIGMSQAVLFLIQLLQSDSDVQCKQDSLHALYNLSTVPSNIPYLLSSGIISGLQSLLVGDGDCSMWTEKCIAVLINVATSEVGREEIVSTSALISALASILDTGELLEQEQAVSCLLILCNKSETCSEMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRRDPSPVKTHQCPPETSDLSTPPAEMNPLCKSVSRRKSGKAFSFIWKSKSYFVYQC 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2307 766 MobiDBLite consensus disorder prediction 225 251 - -
Ssu5g2307 766 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 758 - -
Ssu5g2307 766 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Ssu5g2307 766 MobiDBLite consensus disorder prediction 712 736 - -
Ssu5g2307 766 SMART arm_5 541 582 IPR000225 GO:0005515
Ssu5g2307 766 SMART arm_5 456 500 IPR000225 GO:0005515
Ssu5g2307 766 SUPERFAMILY RING/U-box 278 359 - -
Ssu5g2307 766 PANTHER U BOX DOMAIN-CONTAINING 2 758 - -
Ssu5g2307 766 MobiDBLite consensus disorder prediction 223 251 - -
Ssu5g2307 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 354 IPR013083 -
Ssu5g2307 766 Gene3D - 404 714 IPR011989 -
Ssu5g2307 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 513 IPR000225 GO:0005515
Ssu5g2307 766 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Ssu5g2307 766 CDD RING-Ubox_PUB 285 327 IPR045210 -
Ssu5g2307 766 Pfam U-box domain 282 351 IPR003613 GO:0004842|GO:0016567
Ssu5g2307 766 SUPERFAMILY ARM repeat 429 709 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2307 Ssu-Chr5 65444632 65448571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2307 2 765 U-box Gene Family AT1G24330 67.051 0.0 1033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2307 - - gmx:100794099 1381.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1803 9 55317116 55320924 Ssu5g2307 5 65444632 65448571 PCT