Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2301 ATGGCGGCTGGGAGACATGGCGGCTACCGCGAAAACGAGTTCAGAGAGCGCGAATCGAAATTGGAAGTTTCTAGACGCGGATTCGCGAATTCGAAGGAAGATTACGATCGTGTTAGGAATGGTGGCGGTGATGTTGTGAGGGGTGGGTCAAGGGATAGGGTTAGGGTGAGGCAGAAGGATATtaaggagagagaaagtgttAATGGTGGTTACCGATCCTCTTCGAGTCGGAGTGACTCTGGTAGCAGTGGCCTTGGTCCTCGCCGGTGTGGTTTCTCTGTCAAGACAATGGACAGAGAGCCTGGTGAGCTTTCCAGTGAGAGTGGTTCTGATGATGCTATTGAATCAGAATCCGGGGTGAAAGACTCCGAGGTTGCCATGTTGGAAGAGAACAGGGCTCAGTGGCCGCCGGCGCCGGAGAGGAAAAGGAAGTTTTCGCCCATAGTGTGGGACCATGATGACAAGGATGTCAACGAGTCATCCAAAGTTAGGGTTTCTGCCTCTGCGCGGACGAGGGCGCTTCCTCCTCCGCCTCTGTTGCCAAAGGCATTTCGTTATGGTGGTGTTGAAATTCATCCTGTCAAGAACAGGGAAACTGAGGAACTTCAGTTGAATGCAGCACCGAAGATTACCTTGCCCTCTCCTTCAGATTTGCATTCATCACCGCCGAAAGGGAGCTGGGGTAATGATCAGGAGGCTGAGCATCCGGAAAGTGAAGATTATGTTCCGACTCGCAATATATCGTCTTCGAGATGGGCAGCTGGGGATAACTCTCCTGTTGATGAGGGTGAAATCCTCAACGATGAGGAAATGCCCAAAAGGAGGAGGAGGGTGTCTCCTGATTTATTGAATGGTAGAGTAAGGAACAAGCTATTGAGCCCTGAGGAATCTAAGATAGAAGGTACTGGAGCTAGAGCCAGATCATCTGAATCTGAAGAAAGAGGTGTCCGTGGGAGAACATCCAGTGGCGATGATCATCCTGGTATTGAGTCCGAGAAGGATGACTACATGGAAATTGATGCTCAAGGTGGGAAAAGTGAAACCAGTGTTAGTCACTCAGACACAGATTCTGAAGATGAAAATGATGGCCGGGAGACTCCAGAACCTCCTGCTCCACCTCAAAGAACAGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTTAACAAGATAGATGAAGGAACATATGGTGTTGTATATAGGGCTAGGGATAAAAAGACTGGAGAAATTGTAGCATTGAAGAAGGTCAAGATGGAGAAGGAAAAAGAGGGCTTCCCACTGACTTCTCTTAGGGAAATAaacattcttctttcttttcaccaCCCATCCATAGTTGATGTTAAGGAAGTAGTGGTAGGAAGTAGCCTTGATAGCATTTTCATGGTCATGGAATATATGGAGCATGACCTTAAAGGACTAATGGAGGCAATGAAGCAACCTTTTAGCCAGAGTGAAGTGAAGTGCTTGATGATCCAGCTTTTAGAAGGTGTGAAGTATCTTCATGACAACTGGGTGCTTCATAGGGATTTAAAGACTTCAAACCTGCTTCTAAATAATAGGGGTGAgctcaaaatttgtgattttggctTGGCTCGTCAGTATGGGAGCCCTTTAAAACCATATACACACCTGGTGGTTACTCTTTGGTACAGGGCACCTGAACTTCTGCTGGGGGCAAAACAGTATTCAACAGCCATTGACATGTGGTCTTTAGGTTGTATAATGGCTGAACTATTGTCTAAGGAACCACTGTTTAATGGGAAAACGGAATTTGATCAACTTGACAAGATTTTCCGAATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCAAAATTACCTGGAGTCAAGGTCAATTTTGTCAAACACCAGTACAACCTCCTGCGTAAAAAGTTTCCTGCCACATCATTCACTGGATCTCCTGTTCTTTCTGATTCTGGATTTGATTTGTTGAATAAGCTTCTAACTTATGACCCTGAAAAGAGGATCACTGCTGAAGCTGCTCTCAATCATGAGTGGTTCCGTGAAGTTCCTCTTCCCAAGAGCAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGGCGCTTGCGGAGAATATACAAGAGTCCAGATCCTTTAGAGGAGCAGCGCCGGAAGGAGTTGCAGCAGGGTGAATCAGGGACTGGTGGAATTTTTGGCTAA 2208 0.4534 MAAGRHGGYRENEFRERESKLEVSRRGFANSKEDYDRVRNGGGDVVRGGSRDRVRVRQKDIKERESVNGGYRSSSSRSDSGSSGLGPRRCGFSVKTMDREPGELSSESGSDDAIESESGVKDSEVAMLEENRAQWPPAPERKRKFSPIVWDHDDKDVNESSKVRVSASARTRALPPPPLLPKAFRYGGVEIHPVKNRETEELQLNAAPKITLPSPSDLHSSPPKGSWGNDQEAEHPESEDYVPTRNISSSRWAAGDNSPVDEGEILNDEEMPKRRRRVSPDLLNGRVRNKLLSPEESKIEGTGARARSSESEERGVRGRTSSGDDHPGIESEKDDYMEIDAQGGKSETSVSHSDTDSEDENDGRETPEPPAPPQRTVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMIQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGAKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFDQLDKIFRILGTPNETIWPGFSKLPGVKVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFREVPLPKSKEFMPTFPAQHAQDRRLRRIYKSPDPLEEQRRKELQQGESGTGGIFG 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2301 735 MobiDBLite consensus disorder prediction 710 735 - -
Ssu5g2301 735 SMART serkin_6 389 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2301 735 ProSiteProfiles Protein kinase domain profile. 389 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2301 735 Pfam Protein kinase domain 389 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2301 735 MobiDBLite consensus disorder prediction 8 67 - -
Ssu5g2301 735 MobiDBLite consensus disorder prediction 266 283 - -
Ssu5g2301 735 MobiDBLite consensus disorder prediction 291 341 - -
Ssu5g2301 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 509 521 IPR008271 GO:0004672|GO:0006468
Ssu5g2301 735 MobiDBLite consensus disorder prediction 158 185 - -
Ssu5g2301 735 PANTHER CELL DIVISION PROTEIN KINASE 207 735 - -
Ssu5g2301 735 MobiDBLite consensus disorder prediction 197 377 - -
Ssu5g2301 735 MobiDBLite consensus disorder prediction 710 724 - -
Ssu5g2301 735 MobiDBLite consensus disorder prediction 68 83 - -
Ssu5g2301 735 Gene3D Phosphorylase Kinase; domain 1 374 471 - -
Ssu5g2301 735 CDD STKc_CDC2L1 383 680 IPR045267 GO:0004674|GO:0005524|GO:0006468
Ssu5g2301 735 PANTHER - 207 735 - -
Ssu5g2301 735 SUPERFAMILY Protein kinase-like (PK-like) 381 686 IPR011009 -
Ssu5g2301 735 MobiDBLite consensus disorder prediction 1 124 - -
Ssu5g2301 735 Gene3D Transferase(Phosphotransferase) domain 1 472 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2301 Ssu-Chr5 65357632 65360844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2301 380 725 Core Cell Cycle Gene Families AT5G10270 45.304 1.95e-94 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Ssu5g2301 Pkinase 1.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2301 K08818 - gmx:100792524 1308.89