Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2298 ATGGAGTCTGATTCAGACTCCGACGGATCTCATGTCTCCGCAACTCCACCAAGAAAATCAAGTCCATCACCGCCGCCGCCACCACGACAACCAAACAAATCCCGGATTAGAATCAAACCTTCAAAATCAAAACCAGCCCCTTCCGGACCCTCCAAAACCCGGTCGAAACCCAACCCGACCCGGCAAGCCCCTCTCTCCCTCCCCACCGATCTCCCCTTCCAAATTCGGCGACCTTCCGATCGCGCTCCCGCGCCGTCACTCTCCCACTCCATCGAAACCCTCCCCGCCGGGTACTTCTCCTCCCACTCCGCATCCTTCTCGAAGATTCGAAGGCCCCTCGTCTTAGAACCTTCCGGAACAGAACCGGTTCCTCCTCGCGCCGCGGTCGAGAGTGCCAAAGCGAGGACACGTGGAACGAGGCAGCATCCCAACCTGATAGGCTCCAGCGCGCCGATGCCGACCGTGAAGCTGCGAGCGTGTGGAAACGAAGGGAACTTCGTGAGGTTGAACATGAGTGGCAAGAGGAGAAAGTTCGTGAACAAGAAAGGGAAAGAGAGATTTGGTGGGAAAAGGCACCACAAGAGAGGGAAATTTAAATCGGAGCGTGAAAGGGAGGATCTAGAGGAGGCGATTGGAGAGTTGAAGCGGAGAGGAGGCTGTGGAACGAGGGAGATTGATTGCGATGCGGTGGAGGAGGCCGCGGCCGCGGCGCGCGTGGAGCCCTCGGAGGAGAACTTGGTGAAGTTGTTGAAAATGGTTTATGGTTATGATTGTTTTCGAGAAGGGCAGGTTGAGGCGATTAAGATGGTTCTCGCTGGGAAGTCGAGCGTGCTTGTTTTGCCGACCGGCGCCGGGAAGTCGCTGTGTTATCAGTTGCCTGCTGTGATTTTGCCTGGGATTACATTGGTTGTTAGTCCATTGGTGGCTTTGATGATTGATCAGCTGAGGCAGTTGCCTCCTGTGATTAGGGGTGGTCTTCTATCCAGCACTCAGaCACCTGAAGAGGCCTCTGAATCACTCGAGCAGCTTCGAGAAGGGGCGATAAAGgtGCTTTTTGTTTCACCAGAGCGGTTTCTGAATGAAGAGTTTCTgtctactattttttctttgccAGCCATCTCACTTGTTGTTATTGATGAAGCACATTGTATATCTGAATGGTCTCATAATTTCCGACCTTCGTTTATGAGACTTCGAGCATCTCTACTTCATAAGACACTTAATGTTGGCTCTGTTCTTGCTATGACAGCAACTGCTACAACCACAACTTTAGATGCCATCATGTCTGCTCTAGATATTCCTTCCACAAATCTTATTCAGAAGGCCCAGTTAAGGGACAATTTTCATTTATCAGTGTCTTTGGTCAGAAATAGAACGAAAGACCTACTGGTTTTGATAAAGTCTCCTCCTTTTGCGGATGTTCAAAGCATCATCATATACTGCAAATTTCAGTATGAAACTGATCAAATTAGCAGATATTTGAATGATAACAATATCTTGTCAAAGAGTTATCATAGCGGTATCACTGCAAAGGAACGTAGCTATGTACAGGAGTTGTTTAATTCCAACAAGATCAGAGTGgtTGTCGCAACAGTGGCATTTGGCATGGGACTAGATAAAAGAGATGTTGGAGCTGTAATTCATTACAGTTTGCCTGAAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCTGGAAGGGATGGGAGGTTGTCCTACTGTCACCTATTTTATGATGATGAGACATATTTTAAACTTCGTAGTCTAATGCACAGTGAAGGAGCAGATGAATATGCAGTGAACAAATTTCTGCGTGAAGTGTTTCCTGCTGACAAAAACTCCTGTGGGAAAATCTGTTCATTAATCAGAGAATCTGCTTCACGCAGGTTTGATATGAAAGAAGAGGTGATGCTTACACTTTTGACACGCTTGGAGTTGGGTGATGTGCAGTACTTGCAGTTACTTCCACAGATAAATGCAACTTGTACTTTGGCTTTTCATGAGACTCCTCCGCCATTACTTGCCCAAAAGGTTTCTGCTATAGCTGTAATTCTAAAAagATCTGAAAATAAGCATGGGCAATATATTTTTGACATTCCAACTGTGGCAAATGACATGGGGCTTACAGCAGTTGAATTAACAAATCAGTTGTTTGACCTGAAGTTGATGGGGGAAATAACTTATGAAATGAAGGACTTGGCATACTGTTATAGGATCATTGAAGTCCCAACAGACTTGTTATCTCTATCAGCAGATATTACGCGATGGTTATCAGAAGTTGAAAATTGTAAGGTACGAAAAATGGATGCAATGTTTAATGCCGCATATTTTGCATTAAATCTATGTGATAAGATGCAAGGTTGCAGTGGTGCTGATCACACACCATGCTTGCAAAGGAAAATATTGGATTACTTTTCTGGAGTTGATAACTCTGACTTCTGCAAGAAAATTGGTCAAAGCAGCCCTTTCCTGCGGGCAGATATAAAGGTCTTTCTGCAGAGCAATTCACAGGCTGGATTTACACCAAGAGCCATTGCGAGGATAATGCATGGAATTGCAAGCCCAGCCTATCCTTCAACAGCATGGAATAAAACTCATTTCTGGGGAAGGTATACGAATATAGACTTTAAGGTAGTGATGGAAGCAGCAAAGGCAGAACTTAAGTATTTTGTTGGAAAAGATATGCTCTAG 2691 0.453 MESDSDSDGSHVSATPPRKSSPSPPPPPRQPNKSRIRIKPSKSKPAPSGPSKTRSKPNPTRQAPLSLPTDLPFQIRRPSDRAPAPSLSHSIETLPAGYFSSHSASFSKIRRPLVLEPSGTEPVPPRAAVESAKARTRGTRQHPNLIGSSAPMPTVKLRACGNEGNFVRLNMSGKRRKFVNKKGKERFGGKRHHKRGKFKSEREREDLEEAIGELKRRGGCGTREIDCDAVEEAAAAARVEPSEENLVKLLKMVYGYDCFREGQVEAIKMVLAGKSSVLVLPTGAGKSLCYQLPAVILPGITLVVSPLVALMIDQLRQLPPVIRGGLLSSTQTPEEASESLEQLREGAIKVLFVSPERFLNEEFLSTIFSLPAISLVVIDEAHCISEWSHNFRPSFMRLRASLLHKTLNVGSVLAMTATATTTTLDAIMSALDIPSTNLIQKAQLRDNFHLSVSLVRNRTKDLLVLIKSPPFADVQSIIIYCKFQYETDQISRYLNDNNILSKSYHSGITAKERSYVQELFNSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETYFKLRSLMHSEGADEYAVNKFLREVFPADKNSCGKICSLIRESASRRFDMKEEVMLTLLTRLELGDVQYLQLLPQINATCTLAFHETPPPLLAQKVSAIAVILKRSENKHGQYIFDIPTVANDMGLTAVELTNQLFDLKLMGEITYEMKDLAYCYRIIEVPTDLLSLSADITRWLSEVENCKVRKMDAMFNAAYFALNLCDKMQGCSGADHTPCLQRKILDYFSGVDNSDFCKKIGQSSPFLRADIKVFLQSNSQAGFTPRAIARIMHGIASPAYPSTAWNKTHFWGRYTNIDFKVVMEAAKAELKYFVGKDML 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2298 896 MobiDBLite consensus disorder prediction 18 33 - -
Ssu5g2298 896 Pfam Helicase conserved C-terminal domain 475 568 IPR001650 -
Ssu5g2298 896 PANTHER ATP-DEPENDENT DNA HELICASE Q4 48 819 - -
Ssu5g2298 896 CDD SF2_C_RecQ 445 578 - -
Ssu5g2298 896 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 249 597 IPR004589 GO:0004386|GO:0006310
Ssu5g2298 896 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 458 608 IPR001650 -
Ssu5g2298 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 588 IPR027417 -
Ssu5g2298 896 Gene3D - 444 636 IPR027417 -
Ssu5g2298 896 MobiDBLite consensus disorder prediction 1 88 - -
Ssu5g2298 896 MobiDBLite consensus disorder prediction 46 67 - -
Ssu5g2298 896 MobiDBLite consensus disorder prediction 117 152 - -
Ssu5g2298 896 SMART ultradead3 255 451 IPR014001 -
Ssu5g2298 896 CDD DEXHc_RecQ4-like 247 440 - -
Ssu5g2298 896 SMART helicmild6 488 569 IPR001650 -
Ssu5g2298 896 Coils Coil 197 217 - -
Ssu5g2298 896 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 374 383 IPR002464 -
Ssu5g2298 896 Gene3D - 228 437 IPR027417 -
Ssu5g2298 896 Pfam DEAD/DEAH box helicase 262 423 IPR011545 GO:0003676|GO:0005524
Ssu5g2298 896 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 267 437 IPR014001 -
Ssu5g2298 896 PANTHER DNA HELICASE RECQ FAMILY MEMBER 48 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2298 Ssu-Chr5 65281364 65291098 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2298 478 601 Eukaryotic Initiation Factors Gene Family AT3G19760 30.952 3.67e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2298 K10730 - gmx:100811214 1423.3