Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2281 ATGGAAATGGAATTAATATCCAGAGAAACCATCAAACCCTCCACACCCACCCCTCCTCACCTCAAAATCTATCCCCTCTCCTTCATAGACCACATCGTTTTTCGCAACTACGTCCCATTACTTTTCTTCTACTCCCCAAACGAGGATAGCCATGACCAAACGTCCAAAATATCCACGCTCAAGCAATCCTTGTCTCAAGTCTTATCCCGATACTACCCCTTCGCGGGCAGGTTCAGGGATCAACTTTCCATCGACTGCAACGACGAAGGGGTGTCATTGCTAGTCACAAGTCTCGCATGCGACCTATCATCGATCCTCCACAACCCCACCGAAGCATCGTTGAGCCCTTTGTTCCCCGATGAATTGCAGTGGAAGGCCATGAGCACAACTTCGAGCATAGTAGCCATTCAAATGAACTGTCTCGCGTGTGGAGGAATGGCAATCGGCCTGTGCATGTCTCACAAAGTCGGCGACGCCGCCACTCTTTCTAACTTCGCCAACGACTGGGCCACTTTGAGCCGCGAAAAAGCTGAAGCagagttgttgttattattatcaccCTCACCGGTTCCCGGGGCTTCCCTTTTCCCACAACAAAACTTGCCTCTTTTCCCAGAAGTCGTGTTCGTGAAAAACGACACCGTTTGCAGGAGGCTCGTCTTCGAAGCCTCCAAGATCGACTCCCTCAAAGCCGTGGTGTCCTCTCGCAAAGTGCGTAACCCCACGCGCGTGGAAGTCATCAGCGCGTTGATTTACAAGCGCGCAGTTTCCGCCCTGGGGTTGACTTTCGAGACGACGTCGTTCCGCACCGCCGTGAACCTCCGCAAGAGAACGGTTCCTCCACTCCCCGAGAACAGCGTGGGGAACTTGGTTTGGTTCCTTTTCGTGTTTAACCCGTTCGTGGACGCGAGGGACACGGAACTGCATGAGTTGGTGCTCAAAATGAAAGAAGGGCTAGCTGGGTTTTGCGACACGTGCGCGAAGAAGTTTGGAGGGAAGGAGAGGGACTTGTCGTTCGTCTCGGAGTGTCTGGAGCAAGCTACTTCGGTTCCCGAGCCTCGCGGTTCGGACGAGGAGGGTCaaactttgttttgttttgcgAGTTGGTGCGGGTTTCCGATGTATGAAGCGGATTTTGGGTGGGGGAAACCGGTGTGGTTTACCACGAGTGGGTGCCCCGTGAGGAATAGCATAGTTTTGATGGACACGAGAGACGGGGGTGGGATTGAAGCGCTTGTGAACATGGAAGAGCAAGACATGGCCAAGTTTGAACGTGACGTGGAGCTCCTTCAATATGCTTCTCTTAATCCTGCAGTTGGACATGGTCACGATGGGCCAGCTTTAACTTAA 1350 0.5148 MEMELISRETIKPSTPTPPHLKIYPLSFIDHIVFRNYVPLLFFYSPNEDSHDQTSKISTLKQSLSQVLSRYYPFAGRFRDQLSIDCNDEGVSLLVTSLACDLSSILHNPTEASLSPLFPDELQWKAMSTTSSIVAIQMNCLACGGMAIGLCMSHKVGDAATLSNFANDWATLSREKAEAELLLLLSPSPVPGASLFPQQNLPLFPEVVFVKNDTVCRRLVFEASKIDSLKAVVSSRKVRNPTRVEVISALIYKRAVSALGLTFETTSFRTAVNLRKRTVPPLPENSVGNLVWFLFVFNPFVDARDTELHELVLKMKEGLAGFCDTCAKKFGGKERDLSFVSECLEQATSVPEPRGSDEEGQTLFCFASWCGFPMYEADFGWGKPVWFTTSGCPVRNSIVLMDTRDGGGIEALVNMEEQDMAKFERDVELLQYASLNPAVGHGHDGPALT 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2281 449 Gene3D - 1 202 IPR023213 -
Ssu5g2281 449 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 5 439 - -
Ssu5g2281 449 Pfam Transferase family 2 429 - -
Ssu5g2281 449 PANTHER F21J9.9 5 439 - -
Ssu5g2281 449 Gene3D - 212 434 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2281 Ssu-Chr5 65084932 65086281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2281 1 425 Monolignol Biosynthesis Gene Families AT5G48930 23.261 3.69e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2281 - - gmx:100806928 682.945