Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2277 ATGGAAGCATTGACAGAGTTGTGGTTAGATGGAAACTTGCTTACTGGACCGTTTCCTGACATGAGCAAACTTATAAATCTAAAGATTGTGCATTTAGAGAACAACAAGTTGACAGGTCGACTACCATCTTACCTTGGTAGTTTACCAAGCTTACAAGCACTATTCATACAGAACAACTCATTTAGTGGGGAAATACCAGCCGGATTAGTGTCTGACAAAATCATTTTCAACTATGAGGGTAATCCTGGACTATACAGAGGAAACAAGAAGCATTTTAAGATGGTTGTGGGAATTTCAATTGGAGTACTAGTGAtgctattaatattattcttaggAAGTTTGGTGCTATTGCTTAATACGCGGAGAAAGGCATCTCATCAGAAACGTGAGGAAAAAGGCATTTTTGGACGCACTAACAGTAAGCCTTTAACTGGATACTCATTTCTTCGGGGTGGAAATTTAATGGATGAAAGTACTACTTGCTATATTACACTCTCAGAGTTGAAAGAAGCTACTGacaatttttcaaagaaaattggCAAAGGAAGCTTTGGATCTGTCTACTATGGGAAAATGAGAGATGGAAAAGAAATAGCAGTTAAGAGTATGAGTGAATCATCCTGCCATGGGAACCAGCAATTTGTTAATGAGGTGGCCCTTCTATCAAGAATTCATCACAGAAATTTGGTTCCTTTGATTGGATATTGTGAAGAAGAATGTCAGCATATTCTGGTTTACGAGTATATGCACAATGGCACTTTACGGGATCACATTCATGATAGTTCCAAGAAGAAGAACTTAGACTGGTTGGCTCGTCTTCGGATTGCAGAAGATGCAGCTAAAGGTCTTGAATACTTACACACAGGATGCAATCCTAGTATCATTCACCGTGATATAAAGACAGGCAATATTCTCCTAGACATCAATATGAGAGCAAAAGTATCAGACTTTGGACTCTCTAGATTAGCTGAAGAAGATTTAACCCATATATCAAGCATTGCACGAGGAACTGTGGGCTACTTGGATCCAGAGTACTATGCAAGTCAGCAATTGACAGAAAAGAGTGACGTGTACAGTTTTGGAGTTGTTCTGCTGGAACTGATTTCAGGAAGAAAGCCTGTGTCATCTGAAGATTACGGTTCCGAAATGAACATTGTTCACTGGGCAAGATCCTTAACTCGCAAAGGAGATGCAATGAGCATCATTGACCCTTCTCTAGCTGGGAATGCCAAAACTGAGTCCATTTGGAGGGTGGTTGAAATTGCCATGCAATGTGTAGAACAACATGGTGCCTCCAGGCCAAGGATGCAAGAAATCATTTTGGCTGTACAAGATGCTATCAAGATTGAAAAAGGAacagaaaataagctaaaatcatcatcatcattttcagGTAGTAGTAGTTCAAAGCCACATACTTCCCGAAAAACTTTACTCACAAGCTTTCTTGAAATTGAGAGCCCTGACTTGTCAAATGGTGGCCTCCCATCAGCAAGATAA 1500 0.3833 MEALTELWLDGNLLTGPFPDMSKLINLKIVHLENNKLTGRLPSYLGSLPSLQALFIQNNSFSGEIPAGLVSDKIIFNYEGNPGLYRGNKKHFKMVVGISIGVLVMLLILFLGSLVLLLNTRRKASHQKREEKGIFGRTNSKPLTGYSFLRGGNLMDESTTCYITLSELKEATDNFSKKIGKGSFGSVYYGKMRDGKEIAVKSMSESSCHGNQQFVNEVALLSRIHHRNLVPLIGYCEEECQHILVYEYMHNGTLRDHIHDSSKKKNLDWLARLRIAEDAAKGLEYLHTGCNPSIIHRDIKTGNILLDINMRAKVSDFGLSRLAEEDLTHISSIARGTVGYLDPEYYASQQLTEKSDVYSFGVVLLELISGRKPVSSEDYGSEMNIVHWARSLTRKGDAMSIIDPSLAGNAKTESIWRVVEIAMQCVEQHGASRPRMQEIILAVQDAIKIEKGTENKLKSSSSFSGSSSSKPHTSRKTLLTSFLEIESPDLSNGGLPSAR 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2277 499 ProSitePatterns Protein kinases ATP-binding region signature. 179 201 IPR017441 GO:0005524
Ssu5g2277 499 SUPERFAMILY Protein kinase-like (PK-like) 159 440 IPR011009 -
Ssu5g2277 499 CDD STKc_IRAK 179 440 - -
Ssu5g2277 499 PANTHER OS07G0107800 PROTEIN 1 461 - -
Ssu5g2277 499 Gene3D Ribonuclease Inhibitor 1 91 IPR032675 -
Ssu5g2277 499 Gene3D Transferase(Phosphotransferase) domain 1 249 467 - -
Ssu5g2277 499 MobiDBLite consensus disorder prediction 457 478 - -
Ssu5g2277 499 ProSiteProfiles Protein kinase domain profile. 173 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2277 499 SMART serkin_6 173 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2277 499 Pfam Protein tyrosine and serine/threonine kinase 175 440 IPR001245 GO:0004672|GO:0006468
Ssu5g2277 499 PANTHER OS07G0107800 PROTEIN-RELATED 1 461 - -
Ssu5g2277 499 SUPERFAMILY L domain-like 3 82 - -
Ssu5g2277 499 Gene3D Phosphorylase Kinase; domain 1 153 248 - -
Ssu5g2277 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2277 Ssu-Chr5 65046743 65051217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2277 1 499 Receptor kinase-like Gene Family AT1G67720 67.465 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Ssu5g2277 PK_Tyr_Ser-Thr 9.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2277 - - gmx:100809222 891.338