Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2272 ATGAAACTTTCGTCAGCTGGTTTTAGTCCTCCACCCCCGGAAGGAGAAAAGCGAGTTCTAGATTCAGAACTTTGGCATGCTTGTGCTGGTCCTCTTGTTTCTTTACCAGCTGTTGGAAGCCGCGTGGTTTACTTTCCACAGGGTCACAGTGAACAGGTTGCTGTGTCTACCAACAGGGAAGTGGATGGCCACATACCCAGCTATCCAAGCTTACCACCGCAGCTTATTTGTCAACTTCATAATGTGACTATGCATGCAGATACTGAGACAGATGAAGTATATGCTCAGATGACCTTGCAACCTCTGAGTCCTCAAGAACAGAAGGAGGCATACCTTCCAGCAGAGTTGGGCACTCCGAGTAAACAGCCAACAAACtacttttgcaaaattttaacagcCAGTGACACTAGCACTCATGGGGGGTTTTCTGTTCCTCGCAGGGCTGCCGAAAAAGTTTTTCCTCCATTGGACTTTTCACAACAGCCTCCAGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAGTGGAAATTCAGACATATCTTCCGTGGCCAGCCCAAAAGGCATCTTCTTACAACAGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTACTGTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGGCATGCTAATCGACCTCAACCTGTAATGCCTTCATCAGTGTTGTCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCTGCTCACGCAGCTGCAACTAATAGTCGTTTCACCATCTTTTATAACCCACGTGCTAGCCCATCCGAATTTATCATACCTTTAGCGAAGTATGTTAAAGCTGTGTATCACACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGCTGTTTGAAACGGAGGAATCTAGTGTGCGTCGATACATGGGCACAATAACTGGCATTAGTGACTTGGATTCTGTCCGGTGGCCAAATTCACACTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACAGCAGGAGAGAGGCAACCTCGAGTGTCTTTGTGGGAAATTGAGCCATTAACAACATTTCCAATGTATCCATCTCCATTCCCCCTTAGGCTTAAGAGACCATGGCCTCCTGGAATACCTTCATTCCATGGCTTGAAGGATGATGATTTTGGTATGAATTCTTCACTATTGTGGCTTCGAGACTCAGATAGAGGGCTTCAGTCTCTTAATTTTCAGGGAATTGGTGTTAGTCCTTGGATGCAGCCAAGGCTTGATCCCTCCATGGTGAATTATCAAACAGATATGTACCAAGCTATGGCTGCTGCTGCACTTCGGGATATGTGGACTTCAGATCCTTCCAAACAGCATACTACTTCCTTAATTCAATTTCAGCAACCGCAGAACTTCCCCAACAGGACTTCTCCCTTAATGCAAACCCAAATGTTGCAGCAGCCTCAACCTCAGCAGACTTTTCCCAATAGTCAAGAAAATCCACATCCATCTCAATCTCAGGCTCAAACACAAACACATTTTCAGCAGCATCTACAGCATCAGCACTCATTCAATAATCAGAGTCAGCATCATCTTCTGCAGCAACAGCAACAACcgcaacaacaaccacaactgCAACAGCAACAAGTGGTAGATCATCAGCAGATTTCGAGTGCTGTCTCTACAATGCCTCAGTTTGTTTCAGCACCTCAATCTCAATCACCACCCATGCAAGCTATCGCTTCACTGGGCCATCAGCAAAGTTTTTTGGATTCAAATGGGAACCCTGCTACTACTGCTATTGTTTCTCCCCTGCATAGTATACTGGGTTCATTTCCTCAGGATGAAACATCCCACCTTCTCAACCTTCCTAGAACTACCTCTTGGGTTCCTGTTCAACCTTCAACCGCCTGGCCACCCTCCAAGCGTGTTGCAGTGGATCCTCTCCTTTCTTCTGGAGCATCTCAATGTGTTCTGCCTCAAGCAGAGCAGTTAGGGCAGCCACAGAGTACAATTGCTCAAAATGCTATAACATTGCCACCCTTTCCTGGTAGGGAGTGTGCAATAGAAGGAAGCACTGATCCACAAAATCATCTCCTGTTTGGTGTCAATATAGAACCCTCATCACTTCTAATGCATAATGGGATGTCAAGCCTTAAGGGAGTCAGCAGCAACTGTGACTCACCAACCATACCTTTTCAATCATCTAATTACCTGAACACCACAGGCACTGATTCTTTGTTGATTCCCGGAATGACACACAATATTGGTGAATCGGGCTTCCTGCAAACTCCAGAAAATGGGGGGCAAGGAAACCCACCGAACAAAACCTTTGTGAAGgTTTACAAATCAGGGTCCTTTGGAAGATCATTGGATATCACTAAATTCACCAGCTACCATGAGCTACGCAGCGAGCTTGCTCGCATGTTTGGCCTTGAAGGGGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCAAGAGAATGACGTTCTTCTCCTCGGCGATGGCCCCTGGCCGGAGTTTGTAAATAGTGTGTGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGCAATGGCCTTGAGCTTCTGAACTCGGTACCAATTCAGAGGCTCTCTAATGGTGTCTGCGATGACTATGCGGGCCGTGAGGACCCAAGAAATTTAAGCACTGGGATAACCACTGTGGGGTCTTTAAACTACTGA 2724 0.4581 MKLSSAGFSPPPPEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNREVDGHIPSYPSLPPQLICQLHNVTMHADTETDEVYAQMTLQPLSPQEQKEAYLPAELGTPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGIPSFHGLKDDDFGMNSSLLWLRDSDRGLQSLNFQGIGVSPWMQPRLDPSMVNYQTDMYQAMAAAALRDMWTSDPSKQHTTSLIQFQQPQNFPNRTSPLMQTQMLQQPQPQQTFPNSQENPHPSQSQAQTQTHFQQHLQHQHSFNNQSQHHLLQQQQQPQQQPQLQQQQVVDHQQISSAVSTMPQFVSAPQSQSPPMQAIASLGHQQSFLDSNGNPATTAIVSPLHSILGSFPQDETSHLLNLPRTTSWVPVQPSTAWPPSKRVAVDPLLSSGASQCVLPQAEQLGQPQSTIAQNAITLPPFPGRECAIEGSTDPQNHLLFGVNIEPSSLLMHNGMSSLKGVSSNCDSPTIPFQSSNYLNTTGTDSLLIPGMTHNIGESGFLQTPENGGQGNPPNKTFVKVYKSGSFGRSLDITKFTSYHELRSELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNGLELLNSVPIQRLSNGVCDDYAGREDPRNLSTGITTVGSLNY 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2272 907 Gene3D - 125 228 IPR015300 -
Ssu5g2272 907 SUPERFAMILY CAD & PB1 domains 771 850 - -
Ssu5g2272 907 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Ssu5g2272 907 PANTHER AUXIN RESPONSE FACTOR 1 887 - -
Ssu5g2272 907 Gene3D - 291 363 - -
Ssu5g2272 907 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Ssu5g2272 907 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 887 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu5g2272 907 Pfam AUX/IAA family 772 860 IPR033389 -
Ssu5g2272 907 ProSiteProfiles PB1 domain profile. 775 859 IPR000270 GO:0005515
Ssu5g2272 907 CDD B3_DNA 126 219 IPR003340 GO:0003677
Ssu5g2272 907 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Ssu5g2272 907 SMART B3_2 127 229 IPR003340 GO:0003677
Ssu5g2272 907 Gene3D - 772 864 - -
Ssu5g2272 907 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu5g2272 907 MobiDBLite consensus disorder prediction 482 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2272 Ssu-Chr5 64885141 64891215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2272 1 483 B3 DNA Binding Superfamily AT1G30330 84.426 0.0 824
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu5g2272 AUX_IAA 7.8e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2272 - - gmx:100777789 1617.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2272 5 64885141 64891215 Ssu5g2272 5 64885141 64891215 ECH
Ssu9g1713 9 54292035 54293849 Ssu5g2272 5 64885141 64891215 PCT