Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2271 ATGCCTAAGCAGATCCACGAGATTAAGGATTTCCTTCTGACGGCGCGGAGGAAGGATGCGAGGTCGGTGAAAATCAAGAGGAGCAGGGACGTCGTTAAGTTCAAGGTCCGATGCTCCAAGTACTTGTACACGCTCTGTGTCTTCGACCCCGAGAAAGCCGATAAATTGAAGCAATCTCTTCCTCCCGGTTTGAGTGTTCAAGACCTGTGA 210 0.5048 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPEKADKLKQSLPPGLSVQDL 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2271 69 PANTHER 60S RIBOSOMAL PROTEIN L38 1 69 - -
Ssu5g2271 69 Pfam Ribosomal L38e protein family 2 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
Ssu5g2271 69 Gene3D - 1 69 IPR038464 -
Ssu5g2271 69 PANTHER 60S RIBOSOMAL PROTEIN L38 1 69 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2271 Ssu-Chr5 64877095 64877534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2271 1 69 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 94.203 1.07e-43 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2271 K02923 - gmx:100795924 140.584