Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2262 ATGGGGTCACGTTCGGAGCATCCGCACGATAGCAGTAACACTTTCAGGGCTATCCGTGTGGGAAAATATGAACTAGGTCGAACCCTCGGTGAGGGAAACTTCTCCGTCGTGAAGCTTGCACGTCATGTCGACACCGGAGACAACGTGGCCATCAAAATCCTCGACAAAGAAAGAGTTCTCAGGAACCAAAAGATGGACGTGATGGAacgagaaatattaataatgaaaacgATTAGACACCCGAATGTGGTGCATATGTATGAGGCGATGGCTGCTGAGACAAAGATGTATATTGTACTGGAACTTGTAACTGGTGGGGAACTGTTTGACAAAATTACAAACAGCGGGAGACTGACAGAACCCGAggcaagaaaatattttcagcAGCTTATATGTGCTGTGGATTACTGTTACAGTAAAGGTCTTTTCCATAGAAACTTAAAGCCGGAGAATTTGTTGGTAGATGCTGATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTACCCTGCCTCAACAAGTTCGAtatgatGGGATGCTTCACACAACATGCGGTTCGCCAAAGTACATGGCCCCAGAGGTGATCAGCAACGTCGAATATGAAAGTGCAAAGGCTGATCTCTGGTCATGTGGTGTTATTCTTTTTGTTCTATTGGCTGGTTATTTGCCCTTCAATGATAACGACATCACGGCTTTATATGTGAAGACTTTGCGGGGTGATTTCACCtgtccttcatttttttctccaagTGCAACGAGACTGATTAAGAGAATCCTTCATCCCAATCCTGCTGCACGGATTACAATTAATGGGATCTTTGAGGATGAATGGTTCAAGAAGGACTATATACCTCCTCGAATTTCCCAGGAAAATATTAGTTTGGATAAAGTAAGTTCTAGTTTCAGTGAAGCAATTGATTCACAAAATCTTGTTGCGGAGGGGCAAGATGCGGGGCCTGCAGCACCTGTGACCAGGAATGCGTTTGATATGATGTGTACCTCTCTCGGCTTCAACCTTATTGGAAATCTTTTCAACAAGGTACTTGttaaaagggaaacaagtttCATATCCAAATGTTCTGCGAACGAGATAATTTCAGGAATTGAGCATACTGCAGCGCCTTTGGGTTTTAATGTTAAGAAGAGAAACTACAAgTTGAGGATTGAAGGGGAAAAGGCTGGACGCAAAGGTCATCTATCAATAGCCACTAAGATCTTTGAGGTGGACCCTCCCTTTCACATGGTTGAGCTTCGGAAGGCTGGAGGAGATACTCTGGAATTTGACAAGTTCTACAAGGATCTATCTACTGGGCTGAAACATATCATTTGGAAAGAAGATACAGATGGTGCAGGTGGCAGTACATCAACTGCAAAATAA 1377 0.411 MGSRSEHPHDSSNTFRAIRVGKYELGRTLGEGNFSVVKLARHVDTGDNVAIKILDKERVLRNQKMDVMEREILIMKTIRHPNVVHMYEAMAAETKMYIVLELVTGGELFDKITNSGRLTEPEARKYFQQLICAVDYCYSKGLFHRNLKPENLLVDADGVLKVSDFGLSTLPQQVRYDGMLHTTCGSPKYMAPEVISNVEYESAKADLWSCGVILFVLLAGYLPFNDNDITALYVKTLRGDFTCPSFFSPSATRLIKRILHPNPAARITINGIFEDEWFKKDYIPPRISQENISLDKVSSSFSEAIDSQNLVAEGQDAGPAAPVTRNAFDMMCTSLGFNLIGNLFNKVLVKRETSFISKCSANEIISGIEHTAAPLGFNVKKRNYKLRIEGEKAGRKGHLSIATKIFEVDPPFHMVELRKAGGDTLEFDKFYKDLSTGLKHIIWKEDTDGAGGSTSTAK 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2262 458 PANTHER SERINE/THREONINE KINASE 17 449 - -
Ssu5g2262 458 Gene3D Kinase associated domain 1, KA1 327 444 - -
Ssu5g2262 458 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Ssu5g2262 458 Pfam NAF domain 324 381 IPR004041 GO:0007165
Ssu5g2262 458 CDD CIPK_C 326 439 - -
Ssu5g2262 458 Gene3D Transferase(Phosphotransferase) domain 1 16 326 - -
Ssu5g2262 458 Pfam Protein kinase domain 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2262 458 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 17 449 - -
Ssu5g2262 458 SUPERFAMILY Protein kinase-like (PK-like) 19 314 IPR011009 -
Ssu5g2262 458 ProSiteProfiles Protein kinase domain profile. 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2262 Ssu-Chr5 64656489 64661470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2262 19 451 CBL-interacting serine-threonine protein kinases AT1G01140 57.370 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu5g2262 Pkinase 2.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2262 - - zju:107414012 589.726