Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2261 ATGGCGCATGCGCATGGTAGCAGTAGCGGTAGCAACACTAACAGGACTATCCGTGTGGGAAGATATGAACTGAGTGATACCCTGGGTAGGGGAAACTCCTCCGTCGTGAAGCGTGCACGCCACCTCGTCACCGGAGACAGTGTGGCCATCAAAATTAAACGAGAAATatcaataatgaaaatgattaGACACCCGAATGTCGTGCGTTTGATTGAGGTGATGGCTACCAGGACAAAGATATATATTGTACTGGAACTTATAACTGGTGGAGAACTGTTTGGTAAAATTACAAGCATGGCGGGAATGACAGAAGGCCAggcaagaaaatattttcaccAGCTTATATGTGCTGTGGATTACTGTCACACTAGAGGTGTTTCCCATAGAGACTTAAAACCGGAGAATTTGTTGGTGGACACTAATGAAGTACTTAAAGTATCAGATTTTGGATTGAGTGCACTGCCCCAACAAATTCAACAAGATGGGCTGCTTCACACAGCATGCGGTACGCTACATTATACAGCCCCAGAGgTGTTGAGCAACATCGGCTATGAGGGTGCAAAGGCTGATATCTGGTCATGTGgtgttattcttttttttatgaatgcTGGTTATTTGCCCTTCACCAGTGATAATAACGACCGCGCGGTTTTATATGGAAAGATTTCCCGTGCTGACTTCACCTGTcctccatttttttcttcaagacTAAGGAGACTGATCACGAGAATCCTTGATCCCAATCCTACTACACGGATTACAATTAATGAGATCTTTGAGGATGAATGGTTCAATAAGAATTATCAACCTCCTAGATTTTCCCAGgaaaatattagttttgatAATGTAAGTGCTAGTTTCAGTGAAACAGCTGTAAAATCATTTGCGGGGCCTTCAGCACCAGGGGCACCAGTGGCCATGAATGCGTTTGAGATTTTGAATACATTTCTGGGCTTCAACCTTATTGGAAATCTTTTCAACCAGGTACGtgttaaaaaggaaacaagatTCATATCCCAATCTCCCGCGAATGAGATAATTTCAGGAATTGAGTATGTTGCAGAGACTTTCGGATTTAATGTAAATAAGAGAAACTATCAGATTTATGAGATGGCCCCTCCCTTTCACATGGTTGAGTTTCGGAAGGCTGGAGGAGATACTCTAGAATTTCATAGGTTCTACAAGGATCTATCTGCTGGGCTGCAAGATATCATTTGGAAAGCAGAACCTATCGACGCAGAAACAGATGGttag 1254 0.3971 MAHAHGSSSGSNTNRTIRVGRYELSDTLGRGNSSVVKRARHLVTGDSVAIKIKREISIMKMIRHPNVVRLIEVMATRTKIYIVLELITGGELFGKITSMAGMTEGQARKYFHQLICAVDYCHTRGVSHRDLKPENLLVDTNEVLKVSDFGLSALPQQIQQDGLLHTACGTLHYTAPEVLSNIGYEGAKADIWSCGVILFFMNAGYLPFTSDNNDRAVLYGKISRADFTCPPFFSSRLRRLITRILDPNPTTRITINEIFEDEWFNKNYQPPRFSQENISFDNVSASFSETAVKSFAGPSAPGAPVAMNAFEILNTFLGFNLIGNLFNQVRVKKETRFISQSPANEIISGIEYVAETFGFNVNKRNYQIYEMAPPFHMVEFRKAGGDTLEFHRFYKDLSAGLQDIIWKAEPIDAETDG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2261 417 ProSiteProfiles Protein kinase domain profile. 22 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2261 417 SMART serkin_6 22 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2261 417 PANTHER - 16 409 - -
Ssu5g2261 417 CDD CIPK_C 308 401 - -
Ssu5g2261 417 Pfam NAF domain 304 363 IPR004041 GO:0007165
Ssu5g2261 417 Gene3D Kinase associated domain 1, KA1 302 407 - -
Ssu5g2261 417 Pfam Protein kinase domain 22 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2261 417 Gene3D Transferase(Phosphotransferase) domain 1 13 299 - -
Ssu5g2261 417 SUPERFAMILY Protein kinase-like (PK-like) 18 283 IPR011009 -
Ssu5g2261 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Ssu5g2261 417 ProSitePatterns Protein kinases ATP-binding region signature. 28 60 IPR017441 GO:0005524
Ssu5g2261 417 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 16 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2261 Ssu-Chr5 64649643 64654004 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2261 6 406 CBL-interacting serine-threonine protein kinases AT1G01140 53.047 1.68e-161 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu5g2261 Pkinase 6.7e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2261 - - twl:120014092 477.248