Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2259 ATGCATTTGTGTGGCTATGTCTGTTTCTTTAGTGGTACACTTGAGAGGGGCTTCAAGCCTCATCCTAGGTTGGCAAAGATAGTTTTATCTGCAATATTAACTCAGAATCCAGCCAGGCTAGTTCAGCTTAATTTGCATGGCCCTTTGTTCCTGAGTGCTGGGAAAATGCGTTATCGGCTCCCAGAAAATTTGGAATCTTACAAACTGaTCTGTGAAAGAAAGATCAAACCCTTGTATTTGGTTGCTCTTTTGAAATACCTGGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGACTCAACACATCGTCTCTGCAAATTGCTGAATTGTTTTGAAGATCTGCAAATTGATATCAAGGAGTATTCTGGTCTTCAACATCAACGGGTAAGAAGCAAGATACTGAATGAATTTCGGAAAGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGGCTCGTGGAATGGATGTTGAAGGGGTAACAAATGTCATTAATTATGACATGCCCAAATACATAAAGACTTATGTTCATCGGGCTGGTAGGACTGCAAGAGCTGGCCAGACTGGGCGCTGCTTCACATTGATGTCAAAAGATGAGGTTGGACGATTTAAGAAGTTGATGAAAAAGGCTCAGGCTAGTGCTTGTCTTGAGCATACTATTCCATCCAGTTTGATTGAGGCACTTCATACTACCTACCAATCagCATTGACAAAATTGGAGATAATTTTGGAGACCCGGAAGAAACCCAAGGACAAGTTTTGTCAATAG 771 0.4086 MHLCGYVCFFSGTLERGFKPHPRLAKIVLSAILTQNPARLVQLNLHGPLFLSAGKMRYRLPENLESYKLICERKIKPLYLVALLKYLGEEKCIVFTRSVDSTHRLCKLLNCFEDLQIDIKEYSGLQHQRVRSKILNEFRKGEFQVLVSSDAMARGMDVEGVTNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVGRFKKLMKKAQASACLEHTIPSSLIEALHTTYQSALTKLEIILETRKKPKDKFCQ 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2259 256 Gene3D - 60 255 IPR027417 -
Ssu5g2259 256 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 79 229 IPR001650 -
Ssu5g2259 256 SMART helicmild6 103 187 IPR001650 -
Ssu5g2259 256 CDD SF2_C_DEAD 64 195 - -
Ssu5g2259 256 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 21 232 - -
Ssu5g2259 256 PANTHER RNA HELICASE 21 232 - -
Ssu5g2259 256 Pfam Helicase conserved C-terminal domain 76 187 IPR001650 -
Ssu5g2259 256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 215 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2259 Ssu-Chr5 64638409 64641409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2259 124 201 Eukaryotic Initiation Factors Gene Family AT3G19760 42.308 5.49e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2259 K14807 - gmx:100789424 385.185