Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2245 ATGGAGGAGGATGAGATTCAAGCACAGGCGCGTAAGTTCCCTAGAGTTGGAAACGCAAGGAAAGGGGAAGAGGATGGAGAGCTGAGACCAAACAGGTTCCACAGCTGGCACCACTCTTCGAGGATCATAAGGGTGTCTCGAGCATCTGGGGGGAAAGACAGGCACAGCAAGGTTATGACCTCAAAGGGGTTAAGAGACAGAAGGGTTAGGCTTTCTGTGAACACGGCCATTCAGTTCTATGACCTCCAAGATCGCTTGGGTTGTGACCAACCAAGCAAGGCCGTGGAGTGGCTAATCAAATCTGCTGCTGATGCCATTGCCGAGTTACCCTCTCTGAGCAACACGTTCCCTGACACCCCCAAAAGCGATGAGAAGAGGGGGAGTGATCAGCAAGGGTTTGATTCTGTTGATGCTGAGGTAGATGCTGAGAATGAGAACGGCAACGGCAACGTCAACGGCAACTATCATCATCAGCAGCAGAATAACAATAACCATAACCATAACCATAACCAGAGCCAGAACCTGTCTTTGTCCAAGTCTGCTTGTAGCAGCACTTCTGAGACAAGCAAGGGCTCTGGCTTGTCCCTCTCTAGGTCTGAGATTCGCGTGAACCGTGTGAAGGCCAGGGAGAGGGCGAGGGAGAGAACCGCCAAGGAAAAGGAGAAAgacaatagcaataataatgagTCTCATCACAACAGTGTTCTTCACCACCACAGTGTGAACCCCATTTCCCAAACAGCTTCTTTCACCGAGCTTCTCACAGGTGGGATCAGCAGTGCAGTTCCCACCACAGCCAGTCCCAGAGGGTGTGATGAGCCTAACATGTTCACCAAAGCAGGCAGACCGCAATGGTGTTCATCAGCACCTATGGACTACTTTCTGGGGCCTTCCTCTTCTTCTAGaaactaccaccaccatcaatCCTCTTCTTCCGGGTTCTCAGTCTCACAATTCCATCTGGGACATTCCCTTCCTGAGGCCTTGAATAATGTTTCAGCATTCAACAATGTGAGCGGTGAGAACCACCACTCGTCAGATCCTCAGCTGCAGCACTATTCCTTCATCCCGGATCACCTCATGTCGGCTGTGGTTACTTCTTCTGCTTCTGCTTCTGCTTCTTCTCATGAGCCCAGCGGGAACAACGACTACAATCTCAACTTCACCATATCTTCGGGCCTCGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTCTGTTGCCTCACCTGCAGAGGTTTTCGCCTATAGACGGATCCACTGTACCCTTCTTCATTGGAGCTGCTCCTGCTGCAGCCGCTCCTGCCATggagaacaacaacaacaacaaccaccaccaccaccatcagtTCTCTTCTGTTTTTGATGGCAGCCGCTTGCAACTTTACTATGCAGATGGATGCCGGCACTCTGACCAGAAGGGGAAAGCCAACAACTGA 1446 0.4862 MEEDEIQAQARKFPRVGNARKGEEDGELRPNRFHSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVNTAIQFYDLQDRLGCDQPSKAVEWLIKSAADAIAELPSLSNTFPDTPKSDEKRGSDQQGFDSVDAEVDAENENGNGNVNGNYHHQQQNNNNHNHNHNQSQNLSLSKSACSSTSETSKGSGLSLSRSEIRVNRVKARERARERTAKEKEKDNSNNNESHHNSVLHHHSVNPISQTASFTELLTGGISSAVPTTASPRGCDEPNMFTKAGRPQWCSSAPMDYFLGPSSSSRNYHHHQSSSSGFSVSQFHLGHSLPEALNNVSAFNNVSGENHHSSDPQLQHYSFIPDHLMSAVVTSSASASASSHEPSGNNDYNLNFTISSGLAGYNRGTLQSNSPSLLPHLQRFSPIDGSTVPFFIGAAPAAAAPAMENNNNNNHHHHHQFSSVFDGSRLQLYYADGCRHSDQKGKANN 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2245 481 Pfam TCP family transcription factor 50 222 IPR017887 -
Ssu5g2245 481 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 481 IPR005333 GO:0003700
Ssu5g2245 481 ProSiteProfiles TCP domain profile. 51 109 IPR017887 -
Ssu5g2245 481 MobiDBLite consensus disorder prediction 1 32 - -
Ssu5g2245 481 MobiDBLite consensus disorder prediction 111 234 - -
Ssu5g2245 481 ProSiteProfiles R domain profile. 202 220 IPR017888 -
Ssu5g2245 481 MobiDBLite consensus disorder prediction 202 234 - -
Ssu5g2245 481 MobiDBLite consensus disorder prediction 145 199 - -
Ssu5g2245 481 PANTHER TRANSCRIPTION FACTOR TCP24 1 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2245 Ssu-Chr5 64221476 64222921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2245 31 481 TCP Transcription Factor Family AT4G18390 42.171 3.54e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu5g2245 TCP 1.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2245 - - gmx:100816799 453.751