Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2236 ATGAGGAAGCATTGCAACTTGGAACTTCGCCTTttccctccctccctctccGATCTTCGCCCCATGATGGAAGCAGAAGTGAATGAGAGCCCACAACTACAGGACCCCCACCATCAACGGCCACAGCAACCACAATACCATCCGTTGACCATTTTCTATGATGGCAAGATTTGTGTTTCGGATGTCACAGAGCTTCAGGCCAGATCCATTCTGATGCTAGCAAATAAGGAGATGGAGAAAAGAGTTATGACACCAACTGGGTCAGAACCATCTTCACCAATACTGCAATCACCTCATAACATGTATAGCCCTGGCACTGGACTTTCCATGAAAAGATCGCTGCAGAGGTTTCTCCAGAAGAGGAAGAATCGGGTCCAAGAAACATCCCCATACAATCACTAG 402 0.4478 MRKHCNLELRLFPPSLSDLRPMMEAEVNESPQLQDPHHQRPQQPQYHPLTIFYDGKICVSDVTELQARSILMLANKEMEKRVMTPTGSEPSSPILQSPHNMYSPGTGLSMKRSLQRFLQKRKNRVQETSPYNH 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2236 133 Pfam Jas motif 111 131 IPR018467 -
Ssu5g2236 133 MobiDBLite consensus disorder prediction 81 133 - -
Ssu5g2236 133 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 133 IPR040390 -
Ssu5g2236 133 PANTHER - 1 133 - -
Ssu5g2236 133 Pfam tify domain 44 75 IPR010399 -
Ssu5g2236 133 SMART tify_2 42 76 IPR010399 -
Ssu5g2236 133 MobiDBLite consensus disorder prediction 85 113 - -
Ssu5g2236 133 ProSiteProfiles Tify domain profile. 42 76 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2236 Ssu-Chr5 63999922 64001767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2236 1 131 Tify Gene Family AT1G30135 43.382 4.17e-26 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Ssu5g2236 tify 3.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2236 - - gmx:100305565 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2236 5 63999922 64001767 Ssu5g2236 5 63999922 64001767 ECH