Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2229 ATGAAGAGGGAGCGCGAGCAGGTTGGTTCCAACGCAGGGACCTCGAGCTGCGGCTACTCGAGCGGAAAATCGAACCACCTGTGGGAGGAGGAAGGCGGCATGGACGAGCTCCTGGCGGTGGTGGGTTACAAGGTGAGGTCATCGGACATGGCGGAAGTGGCGCAGAAGCTGGAGCGCCTCGAGGAAGCCATGGGAAACGTGCCGGACAGCCTCACGGAGCTTTCCACCGACGCCGTCCACTACAACCCCGCCGACATCTCCAACTGGCTCGAGACCATGCTCTCCACTTTCGACCCCCTCCCTCCCGAAGACCCCGACAAGGACTCGGCCTCCTCCGACTACGACCTCAAGGTTATTCCTGGGAAAGCAATCTACGGCGGCACCGCCACCGACGCACCCGTTCCGAACCCTAAGCGCCTGAAGCCCTCCGAGTCAACGCGCGCGGTGGTGGTCCTTGACTCGCAGGAGAACGGGATCCGCCTCGTGCACAGCCTCATGGCCTGCGCGGAGGCCGTCGAGAACAACAACCTCGCCGTCGCGGAGGCGCTGGTCAAGCAGATCGGGTTCCTCGCGGTGTCGCAGGTCGGCGCCATGCGCAAGGTCGCCACCTACTTCGCCGAAGCGCTCGCGAGGCGAATCTACCGCGTCTTCCCCCTCCAGCACTCGCTCTCCGATTCGCTCCAGATTCACTTTTACGAGACCTGCCCTTACCTCAAGTTCGCGCACTTCACCGCGAACCAGGCCATTCTGGAGGCGTTCCAAGGGAAGAGCCGCGTCCACGTCATCGATTTCGGAATCAGCCAGGGGATGCAGTGGCCGGCGCTGATGCAGGCGCTCGCGCTTCGTCCCGGCGGTCCTCCGGCTTTCCGGCTAACCGCAATCGGACCTCCCGCCGCGGACAACTCCGACCACCTCCAGGAGGTCGGATGGAAGCTCGCGCAGTTCGCGGAGACGATCAACGTGCAGTTCGAGTACCGCGGCTTCGTCGCCAACAGCCTCGCGGATCTCGACGCCTCCATGCTCGAACTCCGAGAAGACGAGTCCGCCGCGGTGAACTCCGTGTTCGAGCTTCACAAGCTCCTCGCTCGCCCCGGCGCCGTCGAGAAGGTTCTCTCCGTGGTTCGGCAGATTCGGCCGGAGATTCTCACCGTCGTGGAGCAGGAAGCGAGTCACAACGGGCTTTCTTTTCTGGATCGGTTCACCGAGTCGCTGCACTATTACTCCACTTTGTTCGACTCGCTGGAGGGTTCACCTGTTAACCCGCAGGATAAGGCGATGTCGGAGGTTTACTTAGGGAAGCAAATCTGTAACGTGGTGGCGTGCGAGGGAATGGACCGCGTGGAGCGGCACGAGACGCTGAACCAGTGGCGGAACCGGTTTGGTTCGGCCGGCTTCGCTCCGGTTCATTTGGGTTCTAACGCGTTCAAGCAGGCCAGCATGTTGCTCGCGCTGTTTGCGGGAGGGGATGGGTACAGGGTGGAGGAAAACAATGGATGTCTCATGCTGGGATGGCACACTAGGCCCTTGATTGCCACCTCTGCGTGGCAACTCGCTGCAAAATCGGTGGTTACGCACTGA 1578 0.621 MKREREQVGSNAGTSSCGYSSGKSNHLWEEEGGMDELLAVVGYKVRSSDMAEVAQKLERLEEAMGNVPDSLTELSTDAVHYNPADISNWLETMLSTFDPLPPEDPDKDSASSDYDLKVIPGKAIYGGTATDAPVPNPKRLKPSESTRAVVVLDSQENGIRLVHSLMACAEAVENNNLAVAEALVKQIGFLAVSQVGAMRKVATYFAEALARRIYRVFPLQHSLSDSLQIHFYETCPYLKFAHFTANQAILEAFQGKSRVHVIDFGISQGMQWPALMQALALRPGGPPAFRLTAIGPPAADNSDHLQEVGWKLAQFAETINVQFEYRGFVANSLADLDASMLELREDESAAVNSVFELHKLLARPGAVEKVLSVVRQIRPEILTVVEQEASHNGLSFLDRFTESLHYYSTLFDSLEGSPVNPQDKAMSEVYLGKQICNVVACEGMDRVERHETLNQWRNRFGSAGFAPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLAAKSVVTH 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2229 525 MobiDBLite consensus disorder prediction 8 23 - -
Ssu5g2229 525 Gene3D - 33 97 IPR038088 -
Ssu5g2229 525 ProSiteProfiles GRAS family profile. 152 516 IPR005202 -
Ssu5g2229 525 Pfam GRAS domain family 161 516 IPR005202 -
Ssu5g2229 525 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Ssu5g2229 525 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 130 IPR005202 -
Ssu5g2229 525 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 144 517 IPR005202 -
Ssu5g2229 525 SMART DELLA_2 35 107 - -
Ssu5g2229 525 MobiDBLite consensus disorder prediction 1 26 - -
Ssu5g2229 525 PANTHER DELLA PROTEIN GAI1-RELATED 2 130 IPR030006 GO:0003712|GO:0005634
Ssu5g2229 525 PANTHER DELLA PROTEIN GAI1-RELATED 144 517 IPR030006 GO:0003712|GO:0005634
Ssu5g2229 525 Pfam Transcriptional regulator DELLA protein N terminal 35 100 IPR021914 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2229 Ssu-Chr5 63731615 63733192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2229 29 518 GRAS Transcription Factor Family AT1G14920 71.154 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu5g2229 GRAS 2e-137 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2229 K14494 - gmx:547718 928.702