Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2225 ATGTCAGAGGTTTGGCATATTCTGAAGAAATCACTTCATTGCAAACCTCATTCATCAGAAGTTCATGAACCGAAGGCAAGTAGAAGTAGTCCGAGAAAAAAACATGGCAAGATTGAGGATTCAAATGTCAAAgctgaaaaaaataagagagactCAGAGAAACATATTAGCCATGAAATTTTCCTTGATGGCTCAAGCGGTGAGATTAAGATTGGTCCTTTTTCTCAAGGCAATGAAGATGGCAAAGGTGTAGAAGAGCCTCATCCTCCTAGATCAATTATACCTTCATCAAAAACACACTGTGTTGATTGTGATGAATGTAACGTTTTCTCATCAAAGTCAAAGGGGCCACGGGAGAAAGATTCTAATGATCCCCGAACATCAACTCGTCATCATGAATGTGAAGAGAAACTAAAATCTATTGACACTACTGAAGAACATGATAATATCCCTGAACATTCAGTCATCCAACTTCAGAGGGAAGACTCATCTTGCAAGATCATCAAACAAATATGCCAAGATAACTACATTATCAATTCTGAAAGCAAAGCAGCACAGATTGAATGTGTGTTGAGAGTCCAGAACAAGCAAGAAACGTTTGCTTGCTTCGAGGAATGTAGGGAAATGGTAAGGAATAAAGCTGAAAGGCTACAAAACGAGCACCCCCGATGCTTGGTTGATGGAAATGAGCTACTCAGATTTCATGGCACAACTATTGCATGTTCCCTTGGTTTAAATGGCTCTTCTACCCTTTGCACCTTAGACCAATGTGGTGTGTGTCAAATTCTGAGGCACGGTTTCCCCACCAACCAAGAATTTCACGGTGCACACGGGGTTTACACCACTTCTACTAGTGGAAAAGCCATTGAATCCATTTGCTCGTCCAATGATAATTCTGTCCTGAGAAAGTCTGTTATGCTGTGCAGAGTAATAGCTGGGAGAATCCATAATCCTCTGCAAGAGATCAAGGAGATGGCTGATCCTGGGTTTGATTCTTTGGTAAAGAAATTAAGTGACCAATCAGAGATTGAAGAACTCATTGTTTTAAATCCTAGAGCTGTGCTCCCTTGCTTTTTGGTAATCTACAATTTCTGA 1095 0.3973 MSEVWHILKKSLHCKPHSSEVHEPKASRSSPRKKHGKIEDSNVKAEKNKRDSEKHISHEIFLDGSSGEIKIGPFSQGNEDGKGVEEPHPPRSIIPSSKTHCVDCDECNVFSSKSKGPREKDSNDPRTSTRHHECEEKLKSIDTTEEHDNIPEHSVIQLQREDSSCKIIKQICQDNYIINSESKAAQIECVLRVQNKQETFACFEECREMVRNKAERLQNEHPRCLVDGNELLRFHGTTIACSLGLNGSSTLCTLDQCGVCQILRHGFPTNQEFHGAHGVYTTSTSGKAIESICSSNDNSVLRKSVMLCRVIAGRIHNPLQEIKEMADPGFDSLVKKLSDQSEIEELIVLNPRAVLPCFLVIYNF 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2225 364 MobiDBLite consensus disorder prediction 15 97 - -
Ssu5g2225 364 Gene3D - 153 363 - -
Ssu5g2225 364 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 363 - -
Ssu5g2225 364 MobiDBLite consensus disorder prediction 15 61 - -
Ssu5g2225 364 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 363 - -
Ssu5g2225 364 MobiDBLite consensus disorder prediction 111 135 - -
Ssu5g2225 364 SUPERFAMILY ADP-ribosylation 155 363 - -
Ssu5g2225 364 MobiDBLite consensus disorder prediction 112 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2225 Ssu-Chr5 63624196 63628343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2225 132 361 C2H2 Transcription Factor Family AT5G54630 47.059 2.02e-71 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2225 - - gmx:102660699 540.806