Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2220 ATGGACAAGGACAAGGACAAGTCTCACAGTTTTCTTCACAGTATTGTTAAACACTTCAAATTCGGTTCCAGTAAAGAGCGAAACAATGAAGCTGACATTCAGAAAATGGCTGCACAGGAGCAGAAGATCTTTCCCTACGAAACCTTGGCCGCTGCCACCAAGAATTTTAGTGCTATTCATAAGCTAGGTCAGGGAGGTTTTGGACCTGTCTACAAgGGGAAGCTGAATGATGGGAGAGAGATTGCTGTGAAGAAGTTATCACACACTTCAAATCAAGGGAAGAAGGAGTTCATGAATGAGGCCAAGTTGTTGGCTCGTGTGCAGCATCGGAATGTGGTCAATTTGGTGGGCTATTGTGTCCATGGCACGGAGAAGCTACTTGTTTATGAGTATGTTGCTCATGAGAGCCTTGACAAATTTCTATTCAAATCGCAAAAGAGAGAGCAGCTTGATTGGAAACGTAGGCTTGGCATAATCACGGGCGTGGCAAAGGGGCTGCTTTATCTTCACGAAGACTCGCACAATTGCATCATCCATCGCGACATCAAGGCGAGTAACATATTGCTGGATGACAAATGGACGCCCAAGATTGCAGACTTTGGCATGGCCCGCCTCTTCCCCGAAGATCAAAGCCAGGTCAATACACGTGTGGCTGGAACCAATGGGTATATGGCTCCGGAATATGTGATGCATGGAAATTTATCGGTGAAGGCAGATGTATTTAGTTATGGAGTTTTGGTATTGGAGTTGATCACCGGCCAACGAAACTCGTCTTTTAATTTGGATGTGGACGCGCAGAATCTGCTTGATTGGGCATACAAGATGTACAAGAAAGGGAAGAGCTTAGAAATTGTGGATTCTGCATTAGCATCTACGATGGTAGCAGAAGAGGTAGCGATGTGCATTCAGCTGGGTCTGCTATGCACTCAAGGTGATCCACAGCTACGCCCCACGATGAGGCGCGTGGTGGTGATGCTGTCGAGGAAGCCAGGCCACAATCATATGCAAGAACCAACGAGACCAGGAGTGCCTGGTTCAAGATACAGAAGACCTCGCAGACACTCTGCATTGTCTTCCACAGTGGGTACCTCTGATTCACACACTTCTGATTCAAGCAATAATTATACCACGGTTACTACTACTGCCACGGCTGGGACAAGCTCAGCTACTGCAGAAGCAGACCCAAAAGGGAAACGTCCAATGCGGGAGGGCTAG 1215 0.4724 MDKDKDKSHSFLHSIVKHFKFGSSKERNNEADIQKMAAQEQKIFPYETLAAATKNFSAIHKLGQGGFGPVYKGKLNDGREIAVKKLSHTSNQGKKEFMNEAKLLARVQHRNVVNLVGYCVHGTEKLLVYEYVAHESLDKFLFKSQKREQLDWKRRLGIITGVAKGLLYLHEDSHNCIIHRDIKASNILLDDKWTPKIADFGMARLFPEDQSQVNTRVAGTNGYMAPEYVMHGNLSVKADVFSYGVLVLELITGQRNSSFNLDVDAQNLLDWAYKMYKKGKSLEIVDSALASTMVAEEVAMCIQLGLLCTQGDPQLRPTMRRVVVMLSRKPGHNHMQEPTRPGVPGSRYRRPRRHSALSSTVGTSDSHTSDSSNNYTTVTTTATAGTSSATAEADPKGKRPMREG 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2220 404 Pfam Protein tyrosine and serine/threonine kinase 59 325 IPR001245 GO:0004672|GO:0006468
Ssu5g2220 404 Gene3D Transferase(Phosphotransferase) domain 1 133 339 - -
Ssu5g2220 404 ProSiteProfiles Protein kinase domain profile. 56 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2220 404 MobiDBLite consensus disorder prediction 356 390 - -
Ssu5g2220 404 MobiDBLite consensus disorder prediction 327 404 - -
Ssu5g2220 404 SMART serkin_6 56 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2220 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Ssu5g2220 404 CDD STKc_IRAK 62 328 - -
Ssu5g2220 404 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 381 - -
Ssu5g2220 404 PANTHER RECEPTOR-LIKE KINASE 7 381 - -
Ssu5g2220 404 Gene3D Phosphorylase Kinase; domain 1 17 131 - -
Ssu5g2220 404 SUPERFAMILY Protein kinase-like (PK-like) 41 340 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2220 Ssu-Chr5 63499187 63504638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2220 44 342 Receptor kinase-like Gene Family AT4G11530 52.492 6.71e-110 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu5g2220 PK_Tyr_Ser-Thr 1.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2220 - - gmx:100795769 735.332