Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2214 ATGATGACTCCAAACTTGAACTTGGAACCTGAAAACCATTCAGAAGGCAGCGGCCAAGTGGCTTCAAATGTATCCTTGCATGAAGCATCTCATGATCTTACAAAGGGCAGCACCACCACTTCCTCCTGTCTTACAAAGGATGAAGCTGATCCAGGTTCTATTATTCTTGACTTGACACTCAACTTCAATTCCAGTGATGGTGAGTTGAAAGGTTCAAGTGATGCTAGCAGTGAAGTGGGAGCGGAAGCTCCTGCTTCAGCATCAGCAACTCCCAGGGTTTTCTCTTGTAACTACTGCAGGAGGAAGTTCTATAGCTCTCAGGCATTAGGGGGACACCAAAATGCTCACAAAAGGGAAAGGACAATGGCTAAGCGCGCAATGCGAATGGGGATGTTCACTGAGAGGTATACAAGCTTGGCATCTCTACCTCTTCATGGTTCACCTTTTAGGTCTCTTGGACTTGAAGCTCATTCTGCAATGCACCAAAGACACGTGCCATCCTCACTGAGGGCTCCTGATATTAGAGCTGCtgcaaaatttgagaaaaaccATTTTGGATCACTAGTTTTCATGGAAGATGATGATGTTGGATTCTTTTGGCCTGGCAGTTTCAGACAGGTAGAACAAGGAACTGGTGTTAATCTAGGACATGCTCAAAGTTCAAATGCTACTTTAGTTCCAGTGGTGCACCctccaccacaagcttctacATCTCCGGATCTCACACTGAAGCTTTAG 738 0.4336 MMTPNLNLEPENHSEGSGQVASNVSLHEASHDLTKGSTTTSSCLTKDEADPGSIILDLTLNFNSSDGELKGSSDASSEVGAEAPASASATPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGLEAHSAMHQRHVPSSLRAPDIRAAAKFEKNHFGSLVFMEDDDVGFFWPGSFRQVEQGTGVNLGHAQSSNATLVPVVHPPPQASTSPDLTLKL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2214 245 Gene3D Classic Zinc Finger 72 140 - -
Ssu5g2214 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Ssu5g2214 245 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Ssu5g2214 245 MobiDBLite consensus disorder prediction 1 20 - -
Ssu5g2214 245 MobiDBLite consensus disorder prediction 67 86 - -
Ssu5g2214 245 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Ssu5g2214 245 PANTHER ZINC FINGER PROTEIN JAGGED 7 245 IPR045320 GO:0003700
Ssu5g2214 245 MobiDBLite consensus disorder prediction 224 245 - -
Ssu5g2214 245 PANTHER ZINC FINGER PROTEIN 3-RELATED 7 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2214 Ssu-Chr5 63376926 63377663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2214 88 245 C2H2 Transcription Factor Family AT1G66140 46.237 7.00e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu5g2214 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2214 - - gmx:100775305 454.136