LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g2199	ATGGCCAACCTCAAAACCACCTGCGTGACCTCTTTCCTTATCCTACTATCACTCCAACACTTCATCCCTCTCGACGTCACCTCCTACAGCCCAACAGATAATTTCCGCATCAACTGTGGTTCCACCGAGTCACAAACCTCCTCAGACAATCGAAACTGGAGCGCAGACAACCACTCCAAACTCCTCTCAACCGTTCAACCTCAAAACCCTTCACTCACCACAGTCCCTTACAGCACCTCGCGCTTCTCCCGCTCCGAATTCTCCTACTCCTTCCCCGTCTCTGCTGGTCCAAAGTTTCTTCGGCTTTACTTCTACCCTTCTTCCCACCCGGGTTTCAACAGTCACGACTCTCTCTTCTCCGTGAAAGCCAACCACCACACCCTCCTAAACGATTTCAACGCTTCACTCCACgcagacaacaacaacaacgccAATCCCGCAGGAAGAAGAACATTGACAAGAGAATACTACATCAACGTGGAACCCGGCCACCGCTTAAACATAACCTTCACACCCAGCTCCACCACTCACCCCAAAGCCTACGCGTTCATCAACGGCATCGAGGTCGTGTCCCTGCCAAACGAAGCACTCATCAGAAGTTCCAATCCCTCACATTCTCCTACATCACCCAAAGCACCaaccaagaaaaataattttaaaattccaatAATAGCCTCCGTCGTGGCTGCGTTGTTATTTGTGTTATTATCCATCATGGGATTATTAATCTTCCGATGCGTAGGCAGAGTTGCTGGTGGGAAAGACGGGAACCCGGAATCGTCAAGCAGGCGCTGTCGCGAGTTTTCTATCGCGGAGATAAGAGCCGCCACGAACAACTTCGACGAGGGCTTGATCGTGGGGAAAGGAGGGTTCGGGAACGTGTACAAAGGGCACATCGACACGTGTCACAGACCGGTGGCCATCAAGCGGCTCAAGCCGGGTTCGGAGCAGGGCGCGCACGAGTTCCAAACGGAGATCAAGATGCTGTCGCGGTTCCGCCACCCTCACTTGGTGTCCCTCATCGGGTACTGCAGCGGCGGCGGGGAAATGATCCTCGTGTACGACTTCATGTCACGTGGGACCCTCCGCGACCACCTCTACGGCTCCGGCCACGCGCTGTCGTGGGAGCGGCGGCTGGATATCTGCCTCGAGGCGGCCCGTGGGCTGCACTTCCTCCACGCCGGCGTGGACAGGCAGAGCGTCATCCACCGCGACGTGAAGAGCACCAACATCCTGCTGGACGAGGATTGGGTCGCGAAGGTGTCGGATTTCGGGTTGTCGAAGGTGGGGCCCAACGCGTCGCACGTGACCACGGACGTGAAGGGTAGTTTCGGGTATCTGGATCCCGAGTACTACATGAGTCTTTGGTTGACTCAGAAGTCTGACGTGTACTCCTTCGGCGTCGTTTTGCTGGAGGTGTTGTGTGGGAGGCCCCCCATCGAGAGTAGGGTGGTCAAGCATCAGGAGTTCTTGGTGGCGTGGTTCAAGAGGTGTTATCATGATGGGAGTGTTGATCAGACGGTGGATCCGGCTTTGAAGGGGACCATCAGCCCCAGGTGTTTGAAGAAGTTTGTGGAGATCGCGTTGAGTTGTTTGAATGATCACGGGAAGCAACGGCCTCTGATGAGGGACGTGGTGAAGGGGTTGGAGTATGCGTTGAATTTACAACAGTGTTATGCCCAAGGTGGGGCCCCTATTCAGAGAAAGGGAAAGAATGAGGAGGTAGAAATGGGCTTGACCGAAATAGAGCGTCGTGTTGAATCTGACCAGAAATTTGGGAATGTGATGAGCGCGTCTAGCAGCAGGAAGACCACAACAACATGCAGTGAGGAGGAGCAAGCTTTGGTGCATGGGATGTTCCCTGAGCATGGAAATCAAAGAGCAcggtaa	1890	0.5302	MANLKTTCVTSFLILLSLQHFIPLDVTSYSPTDNFRINCGSTESQTSSDNRNWSADNHSKLLSTVQPQNPSLTTVPYSTSRFSRSEFSYSFPVSAGPKFLRLYFYPSSHPGFNSHDSLFSVKANHHTLLNDFNASLHADNNNNANPAGRRTLTREYYINVEPGHRLNITFTPSSTTHPKAYAFINGIEVVSLPNEALIRSSNPSHSPTSPKAPTKKNNFKIPIIASVVAALLFVLLSIMGLLIFRCVGRVAGGKDGNPESSSRRCREFSIAEIRAATNNFDEGLIVGKGGFGNVYKGHIDTCHRPVAIKRLKPGSEQGAHEFQTEIKMLSRFRHPHLVSLIGYCSGGGEMILVYDFMSRGTLRDHLYGSGHALSWERRLDICLEAARGLHFLHAGVDRQSVIHRDVKSTNILLDEDWVAKVSDFGLSKVGPNASHVTTDVKGSFGYLDPEYYMSLWLTQKSDVYSFGVVLLEVLCGRPPIESRVVKHQEFLVAWFKRCYHDGSVDQTVDPALKGTISPRCLKKFVEIALSCLNDHGKQRPLMRDVVKGLEYALNLQQCYAQGGAPIQRKGKNEEVEMGLTEIERRVESDQKFGNVMSASSSRKTTTTCSEEEQALVHGMFPEHGNQRAR	629

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g2199	629	MobiDBLite	consensus disorder prediction	594	612	-	-
	Ssu5g2199	629	PANTHER	OS07G0166700 PROTEIN	208	602	IPR045272	GO:0004714\|GO:0006468
	Ssu5g2199	629	PANTHER	GPCR KINASE, MITOGEN-ACTIVATED PROTEIN (MAP) KINASE KINASE KINASE 7-RELATED	208	602	-	-
	Ssu5g2199	629	PANTHER	GPCR KINASE, MITOGEN-ACTIVATED PROTEIN (MAP) KINASE KINASE KINASE 7-RELATED	24	200	-	-
	Ssu5g2199	629	ProSitePatterns	Protein kinases ATP-binding region signature.	286	309	IPR017441	GO:0005524
	Ssu5g2199	629	Gene3D	Phosphorylase Kinase; domain 1	264	356	-	-
	Ssu5g2199	629	MobiDBLite	consensus disorder prediction	594	629	-	-
	Ssu5g2199	629	Gene3D	-	34	192	-	-
	Ssu5g2199	629	CDD	STKc_IRAK	286	550	-	-
	Ssu5g2199	629	PANTHER	OS07G0166700 PROTEIN	24	200	IPR045272	GO:0004714\|GO:0006468
	Ssu5g2199	629	Gene3D	Transferase(Phosphotransferase) domain 1	357	568	-	-
	Ssu5g2199	629	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	401	413	IPR008271	GO:0004672\|GO:0006468
	Ssu5g2199	629	Pfam	Malectin-like domain	37	197	IPR024788	-
	Ssu5g2199	629	Pfam	Protein tyrosine and serine/threonine kinase	286	548	IPR001245	GO:0004672\|GO:0006468
	Ssu5g2199	629	SMART	serkin_6	280	552	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu5g2199	629	SUPERFAMILY	Protein kinase-like (PK-like)	256	554	IPR011009	-
	Ssu5g2199	629	ProSiteProfiles	Protein kinase domain profile.	280	552	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g2199	Ssu-Chr5	63109707	63111596	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g2199	35	601	Receptor kinase-like Gene Family	AT3G51550	38.725	4.53e-124	387

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Ssu5g2199		PK_Tyr_Ser-Thr	5e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g2199	-		-	ccaj:109805163	867.84