Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2175 atgtcAATGGCTGCTCCAGGTTCCCTTTTGAAGGTGGAGGAAATACAAGGAAGAGGGAGGGGAATGGTTGCATCTCAGCATCTTAAAGCTGGTCAAATTGTCCTCAGAGACTCTCCCATTCTGCTGTATTCGGCGTTGCCCTTGATCACACAGTCTTCATCGTCCACCTCCTCTGCCTCAACTTCTTGCTTCTGTGATCACTGCTTCGGAACCTTGCCTCCATCTCTACAGGGAGATTCTTCATCATCAACGGTTTTGTGCCCCAATTGTTGCCACCATCGTTTCTGCAGCTCAAGTTGTCTTTCAAAGGCATTGAACTCCTCCCATTCTTCTTGGGTATGTCAAGCATTATCTCGTCTCAGAGCCAATTCTCTACTACTTGAACAGCCCCTTGAGCGCCAAGTCCAAGCTAATTTTCTCATTGCTGCCTACAATCTTGCCTATATCTCCCCTTCAGACTTTCAAATTATGCTTTCTCTTCAGGGTTCTCCTGATGATTCCACCATTGCTGCAGCTCAGTTCCTACACCCCCTTATTTCATCCCTCTGCTCACTTGCTCTCATTAGCCCCCAGAATGGATTTTCTTTCGAACTCACTTCTGCACTTCTTGCCAAGGACAAGCTCAATGCCTTCGGCATAATGCAGCCCTTCTCTGTAGATAATGACCAGAGGTCTGTCAGAGCTTATGGTATTTACCCCTATGCCTCCTTTTTTAACCATGATTGTCTTCCCAATGCCTGCAGATTTGATTATGTGGATGCTAATCCACCTGATGACAGCCATAATACTGACTTTATTATTAGGATGATTCATGATGTTCCCCAAGGTAGGGAGATCTGTTTGAGTTATTTCCCTGTGAATGAAAACTATTCTAGTAGGCAGAAGGGATTGATTGAAGACTATGGCTTCACCTGTAACTGTGATCGATGTAATGTGGAATCAAATTGGTCAGATAATGATAGTGTTGAAAATAATGTCGAGGATGAAGAGGAGGTTATGGATGAGGACCAATATGAAACTATGGCAGCATCAGACACTGACAATCATGCCCATGAAGATAATAATGATTTCCCACATGCttacttctttttaaaatacatgtGTGACAGAACAAATTGTGGGGGAACTTTAGCTCCTTTACCTCCACAGGGTGATACTCCATCTAATGTCTTGGAGTGCAATGTTTGTGGCAAATTGAAGAGTGATGATACCTTTGATATTGATGAAGGGCAAGATGGAGTTTCCATGGAGGACTAA 1257 0.4312 MSMAAPGSLLKVEEIQGRGRGMVASQHLKAGQIVLRDSPILLYSALPLITQSSSSTSSASTSCFCDHCFGTLPPSLQGDSSSSTVLCPNCCHHRFCSSSCLSKALNSSHSSWVCQALSRLRANSLLLEQPLERQVQANFLIAAYNLAYISPSDFQIMLSLQGSPDDSTIAAAQFLHPLISSLCSLALISPQNGFSFELTSALLAKDKLNAFGIMQPFSVDNDQRSVRAYGIYPYASFFNHDCLPNACRFDYVDANPPDDSHNTDFIIRMIHDVPQGREICLSYFPVNENYSSRQKGLIEDYGFTCNCDRCNVESNWSDNDSVENNVEDEEEVMDEDQYETMAASDTDNHAHEDNNDFPHAYFFLKYMCDRTNCGGTLAPLPPQGDTPSNVLECNVCGKLKSDDTFDIDEGQDGVSMED 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2175 418 Gene3D - 128 210 - -
Ssu5g2175 418 Gene3D - 64 123 - -
Ssu5g2175 418 SMART set_7 8 290 IPR001214 GO:0005515
Ssu5g2175 418 Gene3D SET domain 21 310 IPR046341 -
Ssu5g2175 418 Coils Coil 319 339 - -
Ssu5g2175 418 ProSiteProfiles SET domain profile. 8 284 IPR001214 GO:0005515
Ssu5g2175 418 SUPERFAMILY SET domain 10 311 IPR046341 -
Ssu5g2175 418 CDD SET_SMYD 208 310 - -
Ssu5g2175 418 Pfam SET domain 19 283 IPR001214 GO:0005515
Ssu5g2175 418 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 2 412 IPR044238 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2175 Ssu-Chr5 62579223 62580479 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu5g2175 SET 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2175 - - gmx:100783406 721.465