Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2171 ATGGTTTTTCCAAAACCTGCTTCTGAATCTGACCTCTTTCTCCATTCTAATTTTGCTTCCCGTTATGCCAGGGACTCTCTTCCCAgGTTCTGCATGCCTGAGAACTCCATGCCCAGGGAGTCTGCGTACCAGAACATTCACGATGAGTTGCAGCTTGATGCCATTCCAAAGCTGAACTTGGCTTCCTTTGTCACCACTTCCATGGAGGAAGAGTGCAACAAGCTCATCATGGAGTCTATCAACAAGAACTATGTAGACATGGACGAGTATCCTGCCACCACTGACCTTCACAATCGGTGCGTGAACATGATAGCACGTTTGTTCCACGCTGAAATTGGAGAAAATGAGAGTGCCATCGGAGCAGGAACCGTTGGATCATCAGAGGCCATAATGCTGGCAGGGCTTGCATTCAAGAAGAAGTGGCAGCACAAGCGCAAGGCAGAGGGAAAGCCCTATGATAACCCCAATTTGGTCACTGGTTCCAATGTCCAGGTATGTTGGGAGAAATTTGCGAGGTATTTTGAGGTGGAGTTAAGGGAAGTGGAGGTGAGAGAAGGGTACTACGTGATGGACCCTGCCAAAGCCGTTGAGATGGTAGATGAGAACACTATTTGTGTGGCTGCAATCTTGGGTTCAACTTACAATGGAGAGTTCGAAGATGTGAAGCTTCTAAATGACCTACTACTAGAAAAAAACAAGCAAACTGGATGGGATACTCCCATTCATGTAGATGCTGCTAGTGGTGGCTTTGTTGCTCCTTTCCTTTACCCAGAGCTAGAATGGGATTTCAGACTCCCATTGGTGAAGAGTATAAATGTTAGTGGGCACAAGTATGGGCTTGTGTATGCTGGAATTGGTTGGGTTATATGGAGGACCAAGGAGGACTTGCCAGAAGACCTTGTCTTCCATATTAATTACCTTGGAGCTGACCAGCCCACCTTCACCCTCAATTTTTCTAAAGGTTCTAGTCAGATCATTGCTCAATATTATCAGCTAATTCGCCTTGGCCAAGAGGGGTACCGGAGCATAATGGAGAACTGCAGAGAAAACGCAATGGTGCTGAAGGAAGATTTGGAGAAGAGTGGACGCTTTAACATACTCTCCAAAGACAATGGTGTTCCTGTGGTGGCATTTTCTCTCAAAGACAGAAGGCAGTACGATGAGTTCAAGATATCAGAGATGTTGCGCCGCCACGGTTGGATCGTGCCAGCATATCCAATGCCACCTGCTGCTCAGCACATCAATGTGCTCCGTGTGGTGATCAGGGCAGAGTTTTCACGCACCCTTGCCGAACGCCTTGTGCTTGACATTCACAATGTGCTGGATGAACTCGAAAAAGTACATCTCCccaaagggactaaaaacactgAGGAACAGAGCATGGCCTTGGTTGAAACTGGGGTCAAGAAAAATGCATTGGATGCACACAGGGAAATCATTGCCCAAGAATCCAACAAGCGTCAGAAAATCATGGCTGCCTAG 1482 0.4642 MVFPKPASESDLFLHSNFASRYARDSLPRFCMPENSMPRESAYQNIHDELQLDAIPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPATTDLHNRCVNMIARLFHAEIGENESAIGAGTVGSSEAIMLAGLAFKKKWQHKRKAEGKPYDNPNLVTGSNVQVCWEKFARYFEVELREVEVREGYYVMDPAKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLLEKNKQTGWDTPIHVDAASGGFVAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGQEGYRSIMENCRENAMVLKEDLEKSGRFNILSKDNGVPVVAFSLKDRRQYDEFKISEMLRRHGWIVPAYPMPPAAQHINVLRVVIRAEFSRTLAERLVLDIHNVLDELEKVHLPKGTKNTEEQSMALVETGVKKNALDAHREIIAQESNKRQKIMAA 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2171 493 Gene3D - 361 447 - -
Ssu5g2171 493 Gene3D - 1 65 - -
Ssu5g2171 493 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Ssu5g2171 493 PANTHER GLUTAMATE DECARBOXYLASE 1 492 IPR010107 GO:0004351|GO:0006536|GO:0030170
Ssu5g2171 493 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Ssu5g2171 493 PANTHER GLUTAMATE DECARBOXYLASE 1 492 - -
Ssu5g2171 493 SUPERFAMILY PLP-dependent transferases 16 446 IPR015424 -
Ssu5g2171 493 CDD DOPA_deC_like 59 437 - -
Ssu5g2171 493 Gene3D - 66 360 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2171 Ssu-Chr5 62502849 62536857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2171 1 481 Calmodulin-binding Proteins AT5G17330 75.565 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2171 K01580 - gmx:100781791 915.99