Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2168 ATGGTAACCCAGCAGCCACAGCTTCAGCTTCAGCCTCAGCCTCAACAGCCTACACCCTCTTCACAAGATGAGGCTTTGAAGAGGAACACCGATTGTGTCTACTTCCTTGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGCGAGTACCGCCATAGCGAGTATGCACGTGTTAATCCAAGGGATTGTAGGTATTGGTTGAATGGCAATTGCTTGAATCCCAAATGTTCATTTCGTCATCCGCCTCTTGATGGCTTGTTAGGAACACAGGCAGCAATGGCTGGTGGACCATCTATACCCCCATCCCAGATTCCAACAGCATCTGCAACACATGCACCTTATAATTCCAGTAAACAAGCTGTCCCTTGCATTTTCTTCCAAAAGGGGTTTTGCTTAAAAGGTGACAGATGTGCCTTCTTGCATGGACCTCCTACTCCTAGCACTGGTAATAAAGTACCTGCTCCAGTTCCAGTGACTAGCCAAGGAGCTGAAAATCCTAGTTTTAAGAAGCCTTTTGGCAGCATTGAAAAGTATACTCAGGAGAGGAAAACTTCCCAGGGGAATGTTGCAAAGTCAGGTGGAGGTCCTGCTGAAGCTAAACCTGCCCCAAAAGTTGAAACTGCTCCTCAAAGAAATATGTTTGAATTGGAGAAGAAAGTGTCACCACTATCTGCGGGATTTGATAATGAGGCTTCTAGATTTAAGATCAGTTCTCCACCAGTGACCAATGGCCCTACTATAGCCCGGTCAAACCGTCTGCATCAAGCTCGTGTGCCAGATGATCATAGTTTCCAGAGTGGCAAGGACAGTGATGAGTTTCTGAGAGAATCATCTCCTGGGTTTGATGTTCTTGTAGCCGATGAACTTAGGAATTCTGATTACTACCATGGGGAAGATGAATTTGGTAAAGCAAGAGGTCAAGATGAAAGGAACTTAGACTCTTTGAATGAATATGATTTAGGACATTCTGGTGATTATAGTTTAGCAGCAGATATTGATCGAGAAAGATTTCGTGGGCCCCAAGGTTACGAGTCGTACGATCACATGCAGGAGCCATATGTTTGGGAGCAGCATAGAAAGGCTTCTGCCCATTTAGACAGAAGGACCCGCCGCAGATCTGACAGTCCTGAAAATGTTGAGGTCTCAGATCTCCGACATCATTTATCCAAGCGCAGGAAGGTCAATGGTTTGAAATCTGTTGTCAGTCATGATTATGCCCTCGAGGGCCATGGTGAGGAACAAAGTCACCGGTCCTTCTCTCGGAAGGATTCAGTCCAGTTACCTCTGAATGAGAGCTCCCTCGGTAATCGCTTCCGGGGTAGAATAAAACTTCCAGCAAATGGTGGTGGTGATCACCTAGAGAGCGAGGACAGAGGAAGGATTAGGAGCAGATTGTCATCTGGAAGGTTGCAGGCGGCTCACCAGGGAAGGATCCATGATAGAATGAGAGGAAGGTTGCAAGATGATGAGTGGAGAAACTCCAAGGATCAATTGATGGGGAGAGAACTAACGGGTGATAGGAGTGATTTTGCTGCACCAAAAAGTCTTGCTGAACTTAAAAATGGGAGGAACACTGAGAATAAGGAGCAACAATCACTGGGAAAGAGAAGCAGTTTAAGGGACCAGCCACAATCTGAAGATGATCTTCAGTTTGAAGGTCCAAAACCTCTAAGTGAAATTCTGAAGGAGAAGAGGGGAGCTGGAGCTGGTGCGGCCTCCGGGAATGGCAAATCATCTGACAATAAGAATGAAGAAGTTACCAATGGCTCGGATCCTCCACCTGTCACAAGCACACAAAATGGAGTGCTGTCTGAGACCAAGGAAGATATCAACAATCATCTGCTAAGTAATGAAGAACCCAAGCTTCAGGTCACTGATGCAGCTGGAGGAGACATTGATGCAACTCATGGTCAATCATATGAGGATGGAATGATGGATGATGAAGCCGTGGAGGATCAGTATTATGAAGGTGATGATCAGAGAGATGCGGACTACGAGTATGAACAAGGTGATGAGGAGGGATACTATGAGTATGATGAGCAAGGTGATGAGGGTGAAAATCAAGAGCAAGACTACatggatgaagaagaagaagatgcgGATGATTTTGCTAAGAAGATTGGTGTCATTGAGAATAAGAAGTAA 2145 0.4508 MVTQQPQLQLQPQPQQPTPSSQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCRYWLNGNCLNPKCSFRHPPLDGLLGTQAAMAGGPSIPPSQIPTASATHAPYNSSKQAVPCIFFQKGFCLKGDRCAFLHGPPTPSTGNKVPAPVPVTSQGAENPSFKKPFGSIEKYTQERKTSQGNVAKSGGGPAEAKPAPKVETAPQRNMFELEKKVSPLSAGFDNEASRFKISSPPVTNGPTIARSNRLHQARVPDDHSFQSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKARGQDERNLDSLNEYDLGHSGDYSLAADIDRERFRGPQGYESYDHMQEPYVWEQHRKASAHLDRRTRRRSDSPENVEVSDLRHHLSKRRKVNGLKSVVSHDYALEGHGEEQSHRSFSRKDSVQLPLNESSLGNRFRGRIKLPANGGGDHLESEDRGRIRSRLSSGRLQAAHQGRIHDRMRGRLQDDEWRNSKDQLMGRELTGDRSDFAAPKSLAELKNGRNTENKEQQSLGKRSSLRDQPQSEDDLQFEGPKPLSEILKEKRGAGAGAASGNGKSSDNKNEEVTNGSDPPPVTSTQNGVLSETKEDINNHLLSNEEPKLQVTDAAGGDIDATHGQSYEDGMMDDEAVEDQYYEGDDQRDADYEYEQGDEEGYYEYDEQGDEGENQEQDYMDEEEEDADDFAKKIGVIENKK 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2168 714 Coils Coil 693 713 - -
Ssu5g2168 714 Gene3D - 17 83 - -
Ssu5g2168 714 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 121 143 IPR000571 GO:0046872
Ssu5g2168 714 MobiDBLite consensus disorder prediction 363 387 - -
Ssu5g2168 714 SUPERFAMILY CCCH zinc finger 118 142 IPR036855 GO:0046872
Ssu5g2168 714 MobiDBLite consensus disorder prediction 450 464 - -
Ssu5g2168 714 MobiDBLite consensus disorder prediction 474 503 - -
Ssu5g2168 714 Pfam Zinc-finger containing family 27 82 IPR041686 -
Ssu5g2168 714 MobiDBLite consensus disorder prediction 1 24 - -
Ssu5g2168 714 ProSiteProfiles Zinc finger C3H1-type profile. 26 55 IPR000571 GO:0046872
Ssu5g2168 714 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Ssu5g2168 714 MobiDBLite consensus disorder prediction 644 701 - -
Ssu5g2168 714 ProSiteProfiles Zinc finger C3H1-type profile. 57 83 IPR000571 GO:0046872
Ssu5g2168 714 Gene3D - 113 188 - -
Ssu5g2168 714 MobiDBLite consensus disorder prediction 574 610 - -
Ssu5g2168 714 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 14 710 - -
Ssu5g2168 714 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 14 710 - -
Ssu5g2168 714 MobiDBLite consensus disorder prediction 180 205 - -
Ssu5g2168 714 SMART c3hfinal6 27 54 IPR000571 GO:0046872
Ssu5g2168 714 SMART c3hfinal6 59 82 IPR000571 GO:0046872
Ssu5g2168 714 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Ssu5g2168 714 MobiDBLite consensus disorder prediction 408 703 - -
Ssu5g2168 714 MobiDBLite consensus disorder prediction 521 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2168 Ssu-Chr5 62465172 62468743 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu5g2168 zf-CCCH_3 2.3e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2168 - - gmx:100787836 1113.21