Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2162 ATGGCCAACAGAGTTCAAATTCCTACCCACAATTCAGCACTTATCGCCATGATTGCAGATGAGGATACTGTAGTTGGATTTCTGTTGGCTGGAGTGGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGAGGATATTGCAATTGTGCTGATTAGCCAATATGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCTGTTCCTGCAATACTTGAAATCCCTTCTAAAGACCATCCTTATGATCCTGCACATGATTCAGTTCTTTCACGAGTAAAGTATCTCTTTGCTACCGAATCGGTAGCATCTGGGAGACGCTGA 393 0.3944 MANRVQIPTHNSALIAMIADEDTVVGFLLAGVGNVDIRRKTNYLIVDSKTTVKQIEDAFKEFTTREDIAIVLISQYVANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLFATESVASGRR 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2162 130 Pfam ATP synthase (F/14-kDa) subunit 15 116 IPR008218 GO:0034220|GO:0046961
Ssu5g2162 130 SUPERFAMILY AtpF-like 15 99 IPR036906 GO:0034220
Ssu5g2162 130 PANTHER V-TYPE PROTON ATPASE SUBUNIT F 1 130 - -
Ssu5g2162 130 TIGRFAM V_ATP_synt_F: V-type ATPase, F subunit 11 124 IPR005772 GO:0033180|GO:0046961|GO:1902600
Ssu5g2162 130 Gene3D ATPase, V1 complex, subunit F 9 122 IPR036906 GO:0034220
Ssu5g2162 130 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT F 1 130 - -
Ssu5g2162 130 PIRSF V-ATP_synth_F 3 123 IPR005772 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2162 Ssu-Chr5 62312789 62318524 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2162 1 126 Primary Pumps ATPases(2) AT4G02620 87.302 5.05e-81 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2162 K02151 - gmx:100305531 249.595