Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2154 ATGCCACAAATGATGAGGTTTTCAACACTTTTAGTTGTGTtccttttgtgtttttatcCCATACTACTAGTCCTTGGTCAGGACAACTCAAACAGTGAGACTTCTTTGAGCGTGCTTTTGGAAGTGAAGAAGTCTTTCGTGCAAGACCCACAAAATGTTCTGAGTGATTGGTCAGAGGATAACACAAACTACTGCAGCTGGAGAGGGGTGTCATGTGAATTGAACTCAAACTCTAACTCAAGTTCAAACACTTTAGATGGTGACTCGGTGCAAGTGGTGGGTCTCAACCTTTCTGACTCGTCACTCATCGGGTCAATATCACCCTCACTCGGTCGTTTGCAAAACCTGCTCCAACTTGATCTCTCCTCCAACAGCCTCACGGCTCCCATTCCACCTACTCTCTCCAACCTCACTTCCTTGGAAtcccttcttctcttctccaaCCAACTCACGGGTCACATTCCCACTGAGTTCGGCTCGCTCACCAGTCTCCGAGTCATGCGACTCGGTGACAATGCACTAACGGGAACTATTCCCTCGTCTCTCGGGAACCTGGTCAACCTGGTCAACCTCGGCTTGGCTTCCTGTGGACTCACCGGGTCAATTCCGAGTCAACTCGGTCAACTCAGTCACATGGAGAATCTGATTCTGCAGGACAACGAGTTGATGGGTCCGATTCCGACCGAGTTGGGGAACTGCTCAAGCCTCACCGTCTTCACTGCAGCTAACAACAAACTCAATGGCTCAATCCCAAGTGAACTGAGTCAACTTAGGAATCTGCAGATTCTCAACTTTGTCAACAACAGCCTATCAGGGGTGATTCCGAGTCAACTCGGTGACATGAGTCAACTCGTTTACCTGAACTTCATGGGGAACCAGCTCGAGGGTGCTATTCCTCCGTCTCTAGCTCAACTGGGTAATCTTCAAAACCTGGACTTGTCAATGAACAATCTAAGTGGAGGAATCCCTGAGGAGTTGGGCAACATGGGTCAGCTAGCTTACATGGTTCTGTCTGGTAACAACCTTGATTGTGTCATACCAAGAACCATATGTTCCAATGCAACAACTTTGGAACACTTGATGCTGTCAGAAAGTGGACTTCATGGGGAGATTCCAGCTGAGTTGAGTCAGTGCCAGCAGCTGAAGCAACTTGATTTGTCCAACAATGCACTCAATGGATCCATACCTCTTGAGCTTTATGGGTTGCTGGGGTTAACTGATCTATTGCTGAACAATAACAGCTTGGTTGGTTCCATCTCTCCCTTCATTGGGAACCTCACTGGCTTGCAGACACTTGCTTTGTTTCACAACAATTTGCAAGGTGCTCTGCCAAGAGAGATTGGAATGCTTGGCAAGTTGGAAATTTTGTATCTTTATGATAATCAATTGTCAGGGGCTATACCTATGGAGATTGGTGATTGTTCTAGTTTGCAAATGGTTGATTTCTTTGGAAACCATTTCGGTGGGGAAATTCCCATCACTATTGGAAGGTTGAAAGAGTTGAATTTTCTTCACCTTCGACAGAATGAGCTTGTGGGTGAGATTCCAGCCACCTTGGGTAATTGTCATAAACTGAACATTCTGGATTTGGCTGACAACCAGCTCTCAGGTGCAATTCCTGCAACGTTTGGATTCCTCAAGGCATTGCAACAACTCATGCTCTACAACAATTCCCTTGAAGGTAACCTCCCTCACCAACTGATATATGTAGCAAACTTGACCAGAGTGAATCTTTCAGAGAACAGATTGAATGGTAGTATAGCTGCATTGTGTAGCTCTcaatcatttctttctttcgaTGTTACCAACAATGAGTTTGACGGTGAAATTCCTTCCCAAATGGGAAACTCACCCTCCCTTGAGAGGCTAAGATTAgataacaataaattttctgGTGAAATTCCAAGGACATTGGGAAAAATCCGTGAGCTGTCATTGTTAGACCTTTCAGGAAATTCACTCACTGGACCAATACCAGCTGAGCTCTCTTTGTGCAACAAACTGGCTTATATTGATTTAAACAGTAATCTTCTTTTTGGACAAATACCATCATGGCTTGCAAATTTGCCTCAGTTGGGAGAGCTTAAGCTCTCCTCCAATAATTTTTCTGGGCCTCTTCCATTAGGCCTATTCAAATGTTCCAAGTTGCTAGTTCTCTCTCTAAATGACAACTCTCTGAATGGAAGTCTCCCAGCTGATATCGGTGATCTTGCATACCTTAATGTCCTCAGACTCGACCACAACAAGATTTCTGGACCAATCCCTCCGGAGATAGGTAAGTTGAGCAAGCTTTATGAGCTCCAGCTCTCCAGAAATAGCTTCAATGGTGAGATGCCAGCTGAGATTGGAAAACTTCAAAATCTCCAAATCATTTTAGACCTCAGTTACAATAATCTCTCAGGTCACATCCCACCTTCTGTGGGGACACTTTCAAAGTTAGAGGTACTTGATGTTTCCCACAATCAACTCACCGGAGAAGTCCCTCCACAAGTTGGGGAAATGAGCAGCTTGGGAAAACTTGATCTTTCTTACAACAACCTTCAAGGAAAATTGGATAAGCAGTTCTCCCGCTGGCCAGACGAGGCATTTGAAGGAAACCTACATCTTTGTGGAAGCCCTCTTGAGCGCTGCCACCTTGATGCTTCTGGGAGTGCAGGCCTAAATGAGTCATCAGTAGTGATAATCTCTTCCATTTCAACTTTAGCTGCAATTGCACTTTTGATACTTGCAGTGAGAATCATCTCCAAAAACAAGCAAGAATTTTGCAGGAAAGGCAGTGAAGTGAATTATGtttactcttcttcttcatcgCAAGCACAGAGAAGACCGCTGTTCCAACTAAATGCTGCTGGAAAGAGAGATTTCAGATGGGAAGACATCATGGATGCCACGAACAATCTAAGTGATGCCTTCATGATTGGTTCAGGAGGTTCAGGGAAAATCTACAGAGCTGAATTGGCCACGGGAGAGATAGTGGCTGTCAAGAAGATTTCATCAAAAGATGAATTTCTGTTAAACAAAAGCTTCATAAGAGAAGTTAAGACACTAGGGAGGATCAGGCATAGACATCTGGTGAAGCTAATAGGATATTGTAGCAATAGAAACAAAGAAGCAGGTTGGAATCTGTTGATATATGAGTACATGGAGAATGGGAGTGTATGGGATTGGCTTCATGGGAAACCAGTCAAGGAGAGCAAAGTAAAGAGGAACCTTGATTGGGAGACAAGGTTCAATATTGCTGTGGGATTAGCTCAAGGAGTGGAGTACCTCCATCACGATTGTGTCCCAAAGATCATTCACAGGGACATCAAATCCAGCAACGTATTGCTAGATTCCAAAATGGAGGCACACTTGGGAGATTTTGGACTAGCAAAAGCAATAACTGAGAATTATGACTCCAATACTGAGTCTAATTCTTGGTTTGCTGGCTCTTATGGCTACATAGCTCCAGAGTATGCATACTCCCTACAGGCAACAGAAAAAAGTGATGTTTACAGCATGGGAATCGTGCTTATGGAACTTGTTAGTGGTAAGATGCCAACAGATGAAATTTTTGGAGCTGAGATGGACATGGTGAGATGGGTAGAGATACACATTGATATGCATGGCTCTGCCCGTGAGGAATTGATAGATCCTGAGCTGAAACCTCTTTTACCTGGCGACGAGTTTGCTGCATTCCAAGTGCTTGAGATAGCCTTACGGTGCACGAAAACAACACCACAGGAGAGGCCATCTTCAAGGAAAGTCTGTGATCTTCTCCTCCATGTATTCAACAACAGGATGGTGGACTTTGAGAAGATGAATTTGGATCATTACAAGTGA 3822 0.4341 MPQMMRFSTLLVVFLLCFYPILLVLGQDNSNSETSLSVLLEVKKSFVQDPQNVLSDWSEDNTNYCSWRGVSCELNSNSNSSSNTLDGDSVQVVGLNLSDSSLIGSISPSLGRLQNLLQLDLSSNSLTAPIPPTLSNLTSLESLLLFSNQLTGHIPTEFGSLTSLRVMRLGDNALTGTIPSSLGNLVNLVNLGLASCGLTGSIPSQLGQLSHMENLILQDNELMGPIPTELGNCSSLTVFTAANNKLNGSIPSELSQLRNLQILNFVNNSLSGVIPSQLGDMSQLVYLNFMGNQLEGAIPPSLAQLGNLQNLDLSMNNLSGGIPEELGNMGQLAYMVLSGNNLDCVIPRTICSNATTLEHLMLSESGLHGEIPAELSQCQQLKQLDLSNNALNGSIPLELYGLLGLTDLLLNNNSLVGSISPFIGNLTGLQTLALFHNNLQGALPREIGMLGKLEILYLYDNQLSGAIPMEIGDCSSLQMVDFFGNHFGGEIPITIGRLKELNFLHLRQNELVGEIPATLGNCHKLNILDLADNQLSGAIPATFGFLKALQQLMLYNNSLEGNLPHQLIYVANLTRVNLSENRLNGSIAALCSSQSFLSFDVTNNEFDGEIPSQMGNSPSLERLRLDNNKFSGEIPRTLGKIRELSLLDLSGNSLTGPIPAELSLCNKLAYIDLNSNLLFGQIPSWLANLPQLGELKLSSNNFSGPLPLGLFKCSKLLVLSLNDNSLNGSLPADIGDLAYLNVLRLDHNKISGPIPPEIGKLSKLYELQLSRNSFNGEMPAEIGKLQNLQIILDLSYNNLSGHIPPSVGTLSKLEVLDVSHNQLTGEVPPQVGEMSSLGKLDLSYNNLQGKLDKQFSRWPDEAFEGNLHLCGSPLERCHLDASGSAGLNESSVVIISSISTLAAIALLILAVRIISKNKQEFCRKGSEVNYVYSSSSSQAQRRPLFQLNAAGKRDFRWEDIMDATNNLSDAFMIGSGGSGKIYRAELATGEIVAVKKISSKDEFLLNKSFIREVKTLGRIRHRHLVKLIGYCSNRNKEAGWNLLIYEYMENGSVWDWLHGKPVKESKVKRNLDWETRFNIAVGLAQGVEYLHHDCVPKIIHRDIKSSNVLLDSKMEAHLGDFGLAKAITENYDSNTESNSWFAGSYGYIAPEYAYSLQATEKSDVYSMGIVLMELVSGKMPTDEIFGAEMDMVRWVEIHIDMHGSAREELIDPELKPLLPGDEFAAFQVLEIALRCTKTTPQERPSSRKVCDLLLHVFNNRMVDFEKMNLDHYK 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2154 1273 Gene3D Transferase(Phosphotransferase) domain 1 1048 1270 - -
Ssu5g2154 1273 ProSiteProfiles Protein kinase domain profile. 967 1258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2154 1273 Gene3D Phosphorylase Kinase; domain 1 927 1047 - -
Ssu5g2154 1273 SUPERFAMILY L domain-like 596 855 - -
Ssu5g2154 1273 Gene3D Ribonuclease Inhibitor 593 661 IPR032675 -
Ssu5g2154 1273 Gene3D Ribonuclease Inhibitor 662 754 IPR032675 -
Ssu5g2154 1273 Gene3D Ribonuclease Inhibitor 193 295 IPR032675 -
Ssu5g2154 1273 Gene3D Ribonuclease Inhibitor 755 878 IPR032675 -
Ssu5g2154 1273 SUPERFAMILY L domain-like 351 677 - -
Ssu5g2154 1273 Gene3D Ribonuclease Inhibitor 492 592 IPR032675 -
Ssu5g2154 1273 Gene3D Ribonuclease Inhibitor 296 394 IPR032675 -
Ssu5g2154 1273 Gene3D Ribonuclease Inhibitor 395 491 IPR032675 -
Ssu5g2154 1273 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 6 1269 - -
Ssu5g2154 1273 Pfam Leucine rich repeat 524 583 IPR001611 GO:0005515
Ssu5g2154 1273 SUPERFAMILY Protein kinase-like (PK-like) 951 1253 IPR011009 -
Ssu5g2154 1273 ProSitePatterns Protein kinases ATP-binding region signature. 973 996 IPR017441 GO:0005524
Ssu5g2154 1273 Pfam Protein kinase domain 972 1250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2154 1273 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Ssu5g2154 1273 SUPERFAMILY L domain-like 36 347 - -
Ssu5g2154 1273 PRINTS Leucine-rich repeat signature 810 823 - -
Ssu5g2154 1273 PRINTS Leucine-rich repeat signature 381 394 - -
Ssu5g2154 1273 SMART LRR_typ_2 137 160 IPR003591 -
Ssu5g2154 1273 SMART LRR_typ_2 498 522 IPR003591 -
Ssu5g2154 1273 SMART LRR_typ_2 546 570 IPR003591 -
Ssu5g2154 1273 SMART LRR_typ_2 689 713 IPR003591 -
Ssu5g2154 1273 SMART LRR_typ_2 257 281 IPR003591 -
Ssu5g2154 1273 SMART LRR_typ_2 834 865 IPR003591 -
Ssu5g2154 1273 SMART LRR_typ_2 450 474 IPR003591 -
Ssu5g2154 1273 SMART LRR_typ_2 426 449 IPR003591 -
Ssu5g2154 1273 SMART LRR_typ_2 761 785 IPR003591 -
Ssu5g2154 1273 SMART LRR_typ_2 378 402 IPR003591 -
Ssu5g2154 1273 SMART LRR_typ_2 810 832 IPR003591 -
Ssu5g2154 1273 SMART LRR_typ_2 161 185 IPR003591 -
Ssu5g2154 1273 SMART LRR_typ_2 305 329 IPR003591 -
Ssu5g2154 1273 SMART LRR_typ_2 641 665 IPR003591 -
Ssu5g2154 1273 SMART LRR_typ_2 113 136 IPR003591 -
Ssu5g2154 1273 Gene3D Ribonuclease Inhibitor 32 192 IPR032675 -
Ssu5g2154 1273 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 6 1269 - -
Ssu5g2154 1273 SMART serkin_6 967 1258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2154 1273 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1098 1110 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2154 Ssu-Chr5 62059087 62063010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2154 5 714 Receptor kinase-like Gene Family AT1G17750 36.034 5.62e-100 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu5g2154 Pkinase 8.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2154 - - gmx:100801889 2178.67