Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2152 ATGGAACAATTTGAACCACAGCCATTCATTCATTTGGTGGAGATGCGTCCGGTGGCACCTTATTCAGTTGGGACAAGCCTTCCTTCCCTTCAATGCCTTCCGTCCCTGCAACCCCAAAAATGTAACAACTATTCACCACCCCAAAAAAGTAACAACTATTCAGCAGCACACCTTAGTCGCCTTCCTTCCCTGCCACCCCAAAAATCTGACAACAATTCGGCACCCCCCCCTAGTTACCATCGTCACGTGAAATGCGCTGCCCCTGTCCGACTCCAACCACAGGTAGCACAACAAAGCATAGCAGTGGTACCTGATGAGATTGAGAGCCCGTGGAAGAGAAGAGATGTCATAGGCCTTGCCTTGGATGCTGCCCTTGCTTCTGCTTTATTGACAGCACTAGGCGCAGCAGGAGCCGAAATTCCATGTGAATTTAAAGTAGCTCCTTCAGGCCTTGCCTTCTGTGATCAACTTGTGGGAACAGGTCCTCAGGCTGTTAAGGGACAGCTTATTAAGGCGCATTATGTGGGGAAATTGGAGAATGGGAAAGTTTTCGATAGCAGCTACAATCGTGGCAAGCCACTAACGTTTCGCGTGGGTGTTGGAGAGGTCATTAAAGGTTGGGATGAAGGCATTTTAGGAGGTGATGGAGTTCCCCCCATGCTAGCAGGAGGGAAACGTACACTGAAGCTTCCTCCAGAACTTGGATATGGCTCAAGAGGGGCTGGTTGCAGAGGAGGTTCATGTATCATTCCTCCTGGTTCGATACTACTATTCGACGTGGAGTTCGTTAGCAAAGCATGA 801 0.4944 MEQFEPQPFIHLVEMRPVAPYSVGTSLPSLQCLPSLQPQKCNNYSPPQKSNNYSAAHLSRLPSLPPQKSDNNSAPPPSYHRHVKCAAPVRLQPQVAQQSIAVVPDEIESPWKRRDVIGLALDAALASALLTALGAAGAEIPCEFKVAPSGLAFCDQLVGTGPQAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRVGVGEVIKGWDEGILGGDGVPPMLAGGKRTLKLPPELGYGSRGAGCRGGSCIIPPGSILLFDVEFVSKA 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2152 266 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 167 266 IPR001179 GO:0003755
Ssu5g2152 266 PANTHER - 79 265 IPR044609 GO:0000413|GO:0003755|GO:0061077
Ssu5g2152 266 Gene3D - 139 266 IPR046357 GO:0003755
Ssu5g2152 266 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 162 262 IPR001179 GO:0003755
Ssu5g2152 266 MobiDBLite consensus disorder prediction 59 80 - -
Ssu5g2152 266 MobiDBLite consensus disorder prediction 59 76 - -
Ssu5g2152 266 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP13, CHLOROPLASTIC 79 265 - -
Ssu5g2152 266 SUPERFAMILY FKBP-like 143 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2152 Ssu-Chr5 62029306 62032447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2152 167 264 Calmodulin-binding Proteins AT5G48570 41.837 5.61e-16 75.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2152 5 62029306 62032447 Ssu5g2152 5 62029306 62032447 ECH