Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2150 ATGCCGCTCCACACTACTTGCTCGCTGTACTTCGACGTCGCTCCACCAGACCACCACTCACTGTACTTTGCCTGtaTGTTAAAAGTATGTGATACTTGGGTGGATGAGGTGATCAAGTGTCATCTAGTCAAAAGACTAACTCACCAACCTTTCATAAAGCTTCCTCATTTATATGATAGCCATATGATCGCACAATATAAAGGAGCAGGTTTTGGTGAGCTAAGTCCATATCCTTTTGCTGTTGCAAATGCAGCATATAGTCGTTTTGGTAAGTTTATGGAGATTCAATTTGACCAGAAGGGAAGAATTTTTAGGGCTGTTATCAAAACTTATCTGCTGGAAAGATCACGTGTTTGCCAAGTTTCAAACCCAGAGAGGAACTATCACCGCTTCTATATGCTCTGTGCTGCACCTCCAAAGGATGTTAAGAAGTATAAATTAGGAAATCCTAGAacatttcattatttgaatcaaTCAAATTGCTTTGAGTTGGAAGGGGTTGATGAGTTAAAAGAATATCGTGATAAGAGGAGAGCAATGGACGTTGTTGGAATAAGTTCTGAGGAGCAGGTATTTTATTGGGAGTTTCTGTAA 594 0.3923 MPLHTTCSLYFDVAPPDHHSLYFACMLKVCDTWVDEVIKCHLVKRLTHQPFIKLPHLYDSHMIAQYKGAGFGELSPYPFAVANAAYSRFGKFMEIQFDQKGRIFRAVIKTYLLERSRVCQVSNPERNYHRFYMLCAAPPKDVKKYKLGNPRTFHYLNQSNCFELEGVDELKEYRDKRRAMDVVGISSEEQVFYWEFL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2150 197 ProSiteProfiles Myosin motor domain profile. 49 197 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu5g2150 197 Gene3D Kinesin motor domain 87 195 IPR036961 -
Ssu5g2150 197 SMART MYSc_2a 13 197 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu5g2150 197 PANTHER MYOSIN-14 84 190 - -
Ssu5g2150 197 PANTHER MYOSIN-14 49 86 - -
Ssu5g2150 197 PANTHER MYOSIN 84 190 - -
Ssu5g2150 197 PANTHER MYOSIN 49 86 - -
Ssu5g2150 197 Pfam Myosin head (motor domain) 85 191 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu5g2150 197 Gene3D Kinesin motor domain 45 86 IPR036961 -
Ssu5g2150 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 195 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2150 Ssu-Chr5 62014614 62017066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2150 50 89 Myosins gene family AT4G28710 72.500 5.07e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2150 K10357 - gmx:100791070 192.586