Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2149 ATGCGTCCTTCAAAGTTAGGTAGGTCAGGTTGTGGTAAACAAGGTGCTTACAACTACAGTCATCGTCACGATGCTGATACGATAGCAAGACTCGAAGTAAAGTTCAGGGAATGCGCACATCCGGACGAAACCCGACGCCGTCAAATAAGCGAGGAGCTCGGGCTTGATCTAAAACAAACTAAAAGCGAGCGATTAGATAACAATGCTCTTCGGCTTGAGAATGAAAGACTACAATCAGAAAACCTCATAATGAGAGAGTCTTTGAAGAATGTATTTTGCGTACCTTGTGGGGGTCGATCCTTGGGAGCAGAAGAGCGTGAACTTTATTTCCAAACCTTAAGGGcggaaaatattttattaactaaagaGGTTAAAATTCAAGCGCCTAATCCTGGTATAAATATACCTTCTCTTACTCCTACCCTGGATCAAGATTTTCCACCTCTTGGTCGAGATATTTCTGCCCTTCATCAGGATAATATGCCCCCTCTTGATCTAGATTTGGATGcggttcttgaaattttgaacaagGATATGTTTCCCCAACCTATGATGAGCCAAAGTAGAGATACGGAAAAGGCACTAATGTCGCAGATTGCAAATACTGCAATGGAGGAATTAATGAAGCTTTTGAGTATGAACGAGCCCTTCTGGTTTAGGTCTCTACTTGACGGGAAATTCATTCTTCAGCGTGACAGCTACCAAAGAATATTTCATAGGAGTAATTGCTTTAGCGGACCTCATGTACGTATAGAGTCATCAAAAGATTCACGAGTAGTGAACATGAGTGGGGCACAACTGGttgaaatgtttttaaattcgGACAAATGGGTTAATCTTTTCCCAACAATTGTTAAAAAAGCCCAAACAATCCAAGTATTCGAAAGCGGTTTGTTAGGAAACCGTAATGGAGCTTTGCAGTTGATGAATGCAGAAATGCACATTCTTTCACATTTGGTTCCAACTAGGGAATTCCTCTTCCTTCGTTATTGTAAACAAATTGAAGTAGGTGTATGGACGATAGGGGATGTGTCACTTGATTCCTCAAAATACAAAACCACTGTTTCTCGCGTTTGGAGGCTTCCCTCTGGATGCCTGATTGAAGAAATGACTCAGGGATTGTGCAGGGTTTCTTGGGTGGAGCACGTGGAAGTGGATGAGAAGATCCAAACTCACCAACTTTTCAGAGATGTTATTTGTGGCAATAATGCATATGGAGCAGAGAGATGGGTTTTGACACTTGAAAGAATGTGTGAGAGGTTTGCATGCGCCTCAGCTGAAACTATACCTAGTTGTGAGGCTGGAGGAGTGATTAGATCACCTGAAGGAAGGAGGAGTATAATGCACCTGGCTCATCGTATGGTTAAGAATTTTTGTAGGACTTTGGACATGCAAGATAACACAAACTTCCCACATTTAACCAGGATGAATAATGGTGGGGTTAGGGTTTCTGTTCGCATGAATAACACAGAGCCAGGTGTGCCAAAAGGCATGATTCTCAATGCTGCTACGTCCTTTTGGCTTCCTCTCTCTCCACAAAATGTTTTTGACTACTTGATAGATAACAAGGAACGAGCTAAGTGGGATGTTCTATGCAATGGAAATGCAGTGCACGAGATTCAACGCATCTCAATTGGAAGTAATCCTGGAAATTGTGTTTCAATTATGCGGCCTTTCATCCCTAGAGAGAACAATATAATGATTATCCAAGAAAGTTATGTAGATGCTTTGGGATCTATGTTGGTATACGCTCCTTTTGATATGGAGGCAATGAACTTCGCCTCGAGGGGAGAAGACACATCACTGTTGCCTATTCTTCCCTCTGGCTATACCATATCTTGGGATGGCCAGTCAAATGATCTTGAAGGACAATCTGGACAAGTTGACAAATCAGGGGGGTCGTTGGTGACTCTAATGTTTCAACTTCTGGCTTCCAGTCCATGTAGAATCAGCATGGTGGACATTGAATTTGTAGGTTCTGTTAATACACTTGTGACCTCAACAGTGAAGAAAATTAAAGCTTCTTTGAATTGTTCCAATTTGAAGTAA 2049 0.409 MRPSKLGRSGCGKQGAYNYSHRHDADTIARLEVKFRECAHPDETRRRQISEELGLDLKQTKSERLDNNALRLENERLQSENLIMRESLKNVFCVPCGGRSLGAEERELYFQTLRAENILLTKEVKIQAPNPGINIPSLTPTLDQDFPPLGRDISALHQDNMPPLDLDLDAVLEILNKDMFPQPMMSQSRDTEKALMSQIANTAMEELMKLLSMNEPFWFRSLLDGKFILQRDSYQRIFHRSNCFSGPHVRIESSKDSRVVNMSGAQLVEMFLNSDKWVNLFPTIVKKAQTIQVFESGLLGNRNGALQLMNAEMHILSHLVPTREFLFLRYCKQIEVGVWTIGDVSLDSSKYKTTVSRVWRLPSGCLIEEMTQGLCRVSWVEHVEVDEKIQTHQLFRDVICGNNAYGAERWVLTLERMCERFACASAETIPSCEAGGVIRSPEGRRSIMHLAHRMVKNFCRTLDMQDNTNFPHLTRMNNGGVRVSVRMNNTEPGVPKGMILNAATSFWLPLSPQNVFDYLIDNKERAKWDVLCNGNAVHEIQRISIGSNPGNCVSIMRPFIPRENNIMIIQESYVDALGSMLVYAPFDMEAMNFASRGEDTSLLPILPSGYTISWDGQSNDLEGQSGQVDKSGGSLVTLMFQLLASSPCRISMVDIEFVGSVNTLVTSTVKKIKASLNCSNLK 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2149 682 SUPERFAMILY Bet v1-like 189 421 - -
Ssu5g2149 682 Gene3D - 197 399 IPR023393 -
Ssu5g2149 682 ProSiteProfiles START domain profile. 189 423 IPR002913 GO:0008289
Ssu5g2149 682 Pfam START domain 199 420 IPR002913 GO:0008289
Ssu5g2149 682 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 18 678 - -
Ssu5g2149 682 SMART START_1 198 420 IPR002913 GO:0008289
Ssu5g2149 682 SUPERFAMILY Bet v1-like 441 642 - -
Ssu5g2149 682 Coils Coil 55 82 - -
Ssu5g2149 682 CDD homeodomain 26 61 IPR001356 GO:0003677
Ssu5g2149 682 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 678 IPR042160 -
Ssu5g2149 682 CDD START_ArGLABRA2_like 193 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2149 Ssu-Chr5 61868281 61877155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2149 21 678 Homeobox Transcription Factor Family AT1G17920 42.795 1.71e-173 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2149 K09338 - gmx:100783586 784.252