Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2148 ATGCGTCCACCAATCATAGGTGGATCAGGTCGTGGTAATCAAGGTGCTTACAGCTACCGTCATCGTCACGATCCTGTTACGGTAGCTAGACTCGAAGAAATGTTCAGGGAATGTGCACATCCGGATGAAAACCGACGCCGTCAAATTAGCGAGGAGCTCGGGCTTAATCTACAACAAGtaaaattttggtttcaaaataagaaGACACAAATAAAgACTATGAGTGAGCGATTAGATAACAATGCTCTTCGGCTTGAGAACGAAAGAATACAATCAGAAAACCTCATAATGAGAGAGACTTTGCAGAATGTACTTTGCGTACCTTGTGGTGGTCGATCCTTGGGATCAGAAGAGCGTGAACTTTATTTGCAAACCTTAAGGGCGGAAAATATTCTATTAACGCAAGAGGCTaAAATTCAAGCGCCTAATCATGGTATAAATACTCCTTCTCGTACTCCTACCCTGGATCAAAATATACCACTTCTTAGTCAAGATATTTCTGCCCTCCACGAGGATAATATGCCCCCTCTTGATCTAGATAAGAATTTGGAAGCGATTCTTGAAATGTTGGACAAGGATATGTTACCCCAACCTATAATGAGCCAAAGTACAGATATGGAAAAATCACTAATGTCGCAGATTGCAAATACTGCAATGGAGGAATTAATGAAGCTCTTGAGCATGAACGAGCCCTTCTGGTTCAGGTCTCTACATGACGGGAAATTCATTCTTCAGAGTGATAGTTACCAACGTATATTTCGTAGGAGTAATTGCTTAAGCGGACCTCATGCACGTATAGAGTCATCAAAAGATTCACGAGTAGTGAACATGGGTGGGGCCCAACTGGttgaaatgtttttaaattcgGACAAATGGGTTAATCTTTTCCCAACAATTGTTAAAAAAGCCCAAACAATTCAAGTATTTGAAAGCGGGTTGTTAGCAAACCGAAATGGAGCTTTGCAGTTGATGAATGCAGAAATGCACATTCTTTCACATTTGGTTCCAACTCGGGAATTTCACTTCCTTCGTTACTGTAAACAAATTGAAGTAGGTGTATGGGCTATAGGGGATGTGTCACTTGATTCCTCAAATGACAAAACCACTGTTTCTCACGCTTGGAGGCTTCCCTCTGGATGCCTGATTCAAGAAATGACTCACGGTTTGTGCAGGGTTTCTTGGGTGGAGCACGTGGAAGTGGATGACAAGATCCAAACTCATCAGCTTTTCAGAGATGTTATTATTGGCGATAATGCATATGGAGCAGAAAGATGGGTTTTGACACTAGAGAGAATGTGTGAGAGACTTGCATGCGCCTCGGCTAACACTATACCTAATTGTGATGTTGGAGGAGTGATTAAATCACGTGAAGGAAGGAGGAGTATAATGCACCTGGCTCATCGTATGGTTAAGACTTTTTGTCGGACTTTGGACATGCAAGATAACAACTTCCCACATTTAACCAGGATTAATAATGGTGGGGTTAGAGTATCTGTTCGTATGAATAACAGAGAGCCAGATGTGCCAAAAGGCATGATTCTCAGTGCTGCTACCTCCTTTTGGCTTCCTCTCTCTCCACAAACTGTTTTTGACTACTTGATAGATAACAAGGAACGAGCTAAGTGGGAGGCTCTATGGTATGGAAATCCAGGGCTCGAGCTTCAACGCATCTCAACTGGAAGTAATCCTGGAAATTGTATTTCAATTTTGCGGCCTATTAGCCCTAATGGGAACAATACAACGATTCTCCAAGAAAGTTATGTAGATGCTTTGGGATCTATGATTGCATACGCTGTTTTTGATATGGAGACAATGAATTTTGCCTTGAGGGGAGAAGACACGTCACAGTTGCTGATTCTTCCCTCTGGCTTTACCATATCTTGGGATGGCCAGTCAAATGCTCTTGAAGGACAATCTGGACAAGTTGGGAAATCAGGAGGTTCGTTGGTGACTCTAATGTTTCAACTTCTGGCTTCCACTCCAACAAGAATGGAAGTAGACTTGGAATTTGTAGGCTCTGTTACTTCACTTGTGTCCTCAACAGTGGAGAAAATTAAAGGTGCTTTGAATTGTTCCAATTAG 2082 0.415 MRPPIIGGSGRGNQGAYSYRHRHDPVTVARLEEMFRECAHPDENRRRQISEELGLNLQQVKFWFQNKKTQIKTMSERLDNNALRLENERIQSENLIMRETLQNVLCVPCGGRSLGSEERELYLQTLRAENILLTQEAKIQAPNHGINTPSRTPTLDQNIPLLSQDISALHEDNMPPLDLDKNLEAILEMLDKDMLPQPIMSQSTDMEKSLMSQIANTAMEELMKLLSMNEPFWFRSLHDGKFILQSDSYQRIFRRSNCLSGPHARIESSKDSRVVNMGGAQLVEMFLNSDKWVNLFPTIVKKAQTIQVFESGLLANRNGALQLMNAEMHILSHLVPTREFHFLRYCKQIEVGVWAIGDVSLDSSNDKTTVSHAWRLPSGCLIQEMTHGLCRVSWVEHVEVDDKIQTHQLFRDVIIGDNAYGAERWVLTLERMCERLACASANTIPNCDVGGVIKSREGRRSIMHLAHRMVKTFCRTLDMQDNNFPHLTRINNGGVRVSVRMNNREPDVPKGMILSAATSFWLPLSPQTVFDYLIDNKERAKWEALWYGNPGLELQRISTGSNPGNCISILRPISPNGNNTTILQESYVDALGSMIAYAVFDMETMNFALRGEDTSQLLILPSGFTISWDGQSNALEGQSGQVGKSGGSLVTLMFQLLASTPTRMEVDLEFVGSVTSLVSSTVEKIKGALNCSN 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2148 693 Gene3D - 211 413 IPR023393 -
Ssu5g2148 693 Coils Coil 68 95 - -
Ssu5g2148 693 Pfam Homeodomain 20 72 IPR001356 GO:0003677
Ssu5g2148 693 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 19 691 - -
Ssu5g2148 693 SMART START_1 213 435 IPR002913 GO:0008289
Ssu5g2148 693 ProSiteProfiles 'Homeobox' domain profile. 14 74 IPR001356 GO:0003677
Ssu5g2148 693 Gene3D - 10 89 - -
Ssu5g2148 693 CDD homeodomain 20 75 IPR001356 GO:0003677
Ssu5g2148 693 SUPERFAMILY Bet v1-like 457 655 - -
Ssu5g2148 693 SMART HOX_1 16 78 IPR001356 GO:0003677
Ssu5g2148 693 CDD START_ArGLABRA2_like 208 434 - -
Ssu5g2148 693 ProSitePatterns 'Homeobox' domain signature. 49 72 IPR017970 GO:0000981|GO:0006355
Ssu5g2148 693 Pfam START domain 214 435 IPR002913 GO:0008289
Ssu5g2148 693 ProSiteProfiles START domain profile. 204 438 IPR002913 GO:0008289
Ssu5g2148 693 SUPERFAMILY Bet v1-like 203 436 - -
Ssu5g2148 693 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 19 691 IPR042160 -
Ssu5g2148 693 SUPERFAMILY Homeodomain-like 10 78 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2148 Ssu-Chr5 61827966 61835445 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2148 21 691 Homeobox Transcription Factor Family AT1G17920 42.082 3.94e-171 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu5g2148 START 4.5e-36 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2148 K09338 - gmx:100783586 734.561