Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2146 ATGAGTACAGGAGACAGGCCAAAAATGCGTGAGCAAACTGGTTGCTTTGATCCCAACACAATGGGAGAAAGTGTAACCTCTCTGAAGGATACTTTTCCTCAAACTCTGCCAGACCCTCTACCTCCATCACCTATGGTTGTAGGCAACACCACAAACAGCAATAATAGCCTTGAAGAAAATCTCGGGCTTTCTGTGGAGGAGCTCTCCTATCACCATCACAATCCACAGGAACCAGAAGATGTCTCCACCTATGCAAATGGAGTCACAGCTTCATCTATTGATATCCCACATCCACAGCATCTAGGTTTGAACATGGGGAACTCctacatcaacaacaacaacatggaTAACCATTTGGTGCAAGAGGTCATTGATGCCATTCCCTATCAGCAGTCCACTTGGGACCCTACTGTTCAGGAATTACAAGACATGGCCTATGCTAATCACAcagaacaacaacaaccaaatgAACAACAATTTCAGCAAATTGAGACTCAAAACTGCAGCCAAAGCTACAATCCCTCTTCCATACTAGACCCTCCTTACCCTTCACCAGATCTCCTAAACCTTCTCCACTTACCAAGATGCTCAGCCTCATCTTTGCTCACCAATCCCACCATATGCCTCACAAACCCAACTCAGAACACACCAAATTTTCAGAATCCGATGACCTTTCTTGGAGACCTTCCAATAGGATCAGACAACACAAGTGCATCCTCAGTTTTGTATGATCCTTTATTCCATCTGAACCTTCCTCCACAGCCTCCAGCCCTCAGAGAGCTGTTTCAGTCTCTCCCCCGCGGCTACAGCTTGCCAACCAACTCCAGGAATGGTTCACTCTTTGGTGGAGGGGATGAGATAGAGGGAGATGGAAGCCAGCTTGACATGGGGGTGCTGGAATTCAACAGGGTCACACCTTCTGTTGGCAAAGGAAGGGGAGGAAAAGCTACCAAACATTTTGCAACTGAGAAACAAAGAAGAGAGCAACTGAATGGAAAATACAAAATCTTGAGGAGTCTCATCCCTAACCCCACCAAGATTGATAGAGCATCTGTGGTGGGGGATGCCATTGACTATATAAGAGAGCTGATTAGAACAGTCAATGAGCTCAAACTACTGGTGGAGAAGAAAAGATATGGGAAGGAGAAGTGCAAGAGGCCCAAAACAGAAGAAGATGGTGCTGAGAGCTGTAACATAAAGCCTTTTGGTGATCCAGATGGGGGCACAAGGACCTCATGGCTCCAGAGGAAATCCAAAGACAGTGAGGTTGATGTCCGGATCATCGATGATGATGTCACAATCAAACTCTTTCAGAGGAAGAAGATTAACTGCCTGCTGTTTGTCTCCAAGGTTTTGGATGAACTTCAGCTGGAACTTCACCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGTTTCTTGTTCAATAGCAAGATAATTGAAGGTTCTTCAGTCTATGCTAGTGCCATAGCCAACAGGGTGATTGATGTTCTGGACACTCAGTACGCAGCAGCAGTTCCACAGACAAACAGCTATTAG 1539 0.4457 MSTGDRPKMREQTGCFDPNTMGESVTSLKDTFPQTLPDPLPPSPMVVGNTTNSNNSLEENLGLSVEELSYHHHNPQEPEDVSTYANGVTASSIDIPHPQHLGLNMGNSYINNNNMDNHLVQEVIDAIPYQQSTWDPTVQELQDMAYANHTEQQQPNEQQFQQIETQNCSQSYNPSSILDPPYPSPDLLNLLHLPRCSASSLLTNPTICLTNPTQNTPNFQNPMTFLGDLPIGSDNTSASSVLYDPLFHLNLPPQPPALRELFQSLPRGYSLPTNSRNGSLFGGGDEIEGDGSQLDMGVLEFNRVTPSVGKGRGGKATKHFATEKQRREQLNGKYKILRSLIPNPTKIDRASVVGDAIDYIRELIRTVNELKLLVEKKRYGKEKCKRPKTEEDGAESCNIKPFGDPDGGTRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKINCLLFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIDVLDTQYAAAVPQTNSY 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2146 512 CDD bHLH_AtMYC1_like 319 382 IPR045896 -
Ssu5g2146 512 MobiDBLite consensus disorder prediction 390 411 - -
Ssu5g2146 512 MobiDBLite consensus disorder prediction 1 57 - -
Ssu5g2146 512 PANTHER TRANSCRIPTION FACTOR BHLH91 9 510 - -
Ssu5g2146 512 Pfam Helix-loop-helix DNA-binding domain 317 363 IPR011598 GO:0046983
Ssu5g2146 512 SMART finulus 320 369 IPR011598 GO:0046983
Ssu5g2146 512 MobiDBLite consensus disorder prediction 305 325 - -
Ssu5g2146 512 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 363 IPR011598 GO:0046983
Ssu5g2146 512 MobiDBLite consensus disorder prediction 17 33 - -
Ssu5g2146 512 Gene3D - 312 385 IPR036638 GO:0046983
Ssu5g2146 512 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 376 IPR036638 GO:0046983
Ssu5g2146 512 PANTHER TRANSCRIPTION FACTOR BHLH91 9 510 IPR045895 GO:0006355|GO:0048658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2146 Ssu-Chr5 61737337 61739672 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2146 14 512 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 38.433 6.62e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g2146 HLH 8.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2146 - - gmx:100782512 849.736