Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2136 ATGATGCATGTAACTTTCATTTTTGCACCTTACAGTTTGGCTGAGGCTAGGCAACCGCTGTGGCGCAAGGTCCCAATATCTTCGAGCCTAGTCAACCCATATCGCATAGTCATAATCATGAGGCTCGTTATCCTAGTTTTCTTCCTCCGTTTCCGTATCTTAACTCCAGCATACGATGCATATCCACTGTGGTTTGCCTCTGTGATATGTGAAATATGGTTTGCGCTGTCATGGATACTTGACCAGTTCCCCAAATGGTTCCCCATCACTCGTGAAACTTACTTAGACCGCTTGTCCATTAGGTTTGAGCGTGAAGGGGAGCCAAGCCTTCTAGCCCCAGTTGATGTCTATGTGAGTACTGTGGACCCTTTGAAGGAACCACCCATTATAACAGCAAACACTGTTCTTTCAATCCTCGCTGTTGATTACCCGGTTGAGAAGGTGTGCTGCTATGTATCTGATGATGGTGCATCTATGCTTCTGTTTGATACACTGTCAGAAACTTCTGAGTTTGCAAGAAGATGGGTTCCTTTTTGCAAGATGTACAACATAGAGCCAAGGGCACCTGAGTTCTATTTTTCTCAGAAGATTGACTACTTGAAAGATAAGGTGCATCCCACCTTTGTGAAGGAACGAAGGGCCATGAAGAGAGAATATGAAGagtttaaagtgaaaattaatgcTTTAGTGGCAAAAGCTCAAAAGAAACCAGAGGAGGGGTGGGTGATGCAGGATGGCACCCCGTGGCCAGGGAACAACACTCGTGATCATCCAGGAATGATTCAGGTATATTTAGGAAGTGGTGGTGCATTGGACGTAGAGGCAAGGAACTGCCACGACTTGTGTATATTTCACGTGAAAAGCGTCCTGGCTATAACCACCACAAAAAAGCTGATCAATATGAAAGCCCTTGATGGGATTCAAGGTCCGGTTTATGTTGGTACTGGATGTGTGTTCAATAGGAAGGCATTATATGGATATGATCCACCAGTATCTGAGAAAAGGCCAAAGATGACTTGTGACTGCTGGCCCTCATggtgttgctgttgttgtggtGGCTCAAGGAAATCCAAGTCAAAGAAGAAATCAGGAGGAGGGGGTCTCTTTAGTAGATTATacagcaagaagaagaagaaaatgatgggGAAGAATTATGTTAGGAAAGGGTCTGAGTCCATGTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGCTATGATAAACTAGAGAAATCATCCCTCATGTCCCAGAAACAATTTGAGAAACGATTTGGGCAGTCACCAGTTTTCATTGCTTCCACTTTGATGGAAAATGGTGGACTTCCTGAAGGCACCAATACCCAATCACTAATTAAGGAAGCTATTCATGTTATAAGTTGTGGCTATGAAGAGAAGACTGAATGGGGCAAAGAGATTGGATGGATTTATGGCTCAGTCACAGAAGATATTTTAACAGGGTTTAAGATGCATTGTAGAGGATGGAAATCAGTATACTGCATGCCAAAGAGAACAGCTTTCAAGGGATCTGCCCCAATAAATCTATCAGATAGGTTACACCAAGTTCTGAGATGGGCTCTTGGTTCTGTTGAAATTTTCCTTAGTCGCCATTGCCCATTGTGGTATGGCTATGGAGGAAAGCTGAAATGGCTAGAGAGGTTGGCTTATACTAATACCATTGTTTATCCATTCACTTCCATCCCTCTCCTTGCATACTGCACAATTCCAGCAGTGTGTCTTCTTACTGGAAAATTCATCATCCCTACCTTGACCAACCTTGCTAGTGTATGGTTCATGGCTCTATTCATCTCCATCATTTTAACTGGTGTGCTTGAGCTTAGGTGGAGTGGGGTTAGTATTGAAGACTGGTGGCGCAATGAGCAATTTTGGGTCATTGGAGGTGTTTCTGCACACCTTTTTGCTGTATTCCAAGGTCTCCTTAAGGTTCTTGGAGGAGTAGAAACCAATTTCACTGTCACAGCCAAAGCAGCAGATGATACTGAATTTGGAGAGTTGTATCTGTTCAAGTGGACAACACTTCTCATCCCACCAACCACTCTTATAATCTTGAATATGGTGGGAGTTGTGGCTGGAGTCTCTGATGCCATTAACAATGGCTATGGTTCATGGGGTCCTTTGTTTGGGAAGCTATTCTTTGCCTTCTGGGTCATTGTCCACCTATATCCTTTCCTCAAAGGTCTCATGGGAAAGCAAAACAGGACACCTACTATTGTTGTCCTCTGGTCAATTCTCCTAGCATcaattttctctttgatttgGGTCAGGATTGATCCTTTCTTGCCCAAGCAAACTGGTCCAGTACTCAAACAATGTGGAGTAGAATGCTAA 2346 0.4216 MMHVTFIFAPYSLAEARQPLWRKVPISSSLVNPYRIVIIMRLVILVFFLRFRILTPAYDAYPLWFASVICEIWFALSWILDQFPKWFPITRETYLDRLSIRFEREGEPSLLAPVDVYVSTVDPLKEPPIITANTVLSILAVDYPVEKVCCYVSDDGASMLLFDTLSETSEFARRWVPFCKMYNIEPRAPEFYFSQKIDYLKDKVHPTFVKERRAMKREYEEFKVKINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSGGALDVEARNCHDLCIFHVKSVLAITTTKKLINMKALDGIQGPVYVGTGCVFNRKALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKSGGGGLFSRLYSKKKKKMMGKNYVRKGSESMFDLEEIEEGLEGYDKLEKSSLMSQKQFEKRFGQSPVFIASTLMENGGLPEGTNTQSLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRTAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVETNFTVTAKAADDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPVLKQCGVEC 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2136 781 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 12 277 - -
Ssu5g2136 781 Coils Coil 212 232 - -
Ssu5g2136 781 Pfam Cellulose synthase 114 277 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu5g2136 781 Pfam Cellulose synthase 299 774 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu5g2136 781 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 299 781 - -
Ssu5g2136 781 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 12 277 - -
Ssu5g2136 781 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 299 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2136 Ssu-Chr5 61644594 61648181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2136 13 781 Cell Wall Biosynthesis AT5G17420 63.770 0.0 1045
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2136 K10999 - gmx:100780354 887.871