Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2123 ATGGTGAAGTACgtcatatttgataaaataggGACTCTAACTCGGGGGAAAGCCACTGTCACTGCTGCTAAGGTGCAGGAATGGACCTTGAAGAATTTTTTACTTTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCACTGGCAAAAGCGATATTGCAATATGCACgccattttcatttctttgacGAGTCTTCTCCTACCACTGGTACCAAGAATGAAGCTGAGGACTTCAAGTCAGGTTGGTAACCGGAAGCTGCTGGAGGAAAATAGCATAAATATTTCTACAGACGTGGAAAATTTTGTTGTAGAGCTGGAAGAAAGTGCAAAGACAGGGATACTGGTAGCATCTGATGATGTGTTAATTGGAGTCCTAGGGATCGCAGACCCACTAAAGAGAGAAGCTTCTGTTGTTATAGAGGGCCTCTGGAAAATGGGAGTCATACCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTCGAGCTGTTGCCAAGGAGGTTGGCATTCAGGATGTTAGGGCAGAGGTTATGCCTGCAGGAAAGGCTGATGTTGTTCGTTCATTCCAAAAGGATGGAAGTATAGTTGCAATGGTGGGTGATGGCATCAATGACTCTCCAGCATTAGCTACTGCAGATGTTGGTATGGCAATTGGGGCTGGGACAGATGTTGCAATAGAAGCTGCTAACTATGTGCTGATGAGAGATAACTTGGAAGATGTGATCACAGCCATTGATCTTTCCAAAAGACCTTTTTGA 756 0.4312 MVKYVIFDKIGTLTRGKATVTAAKVQEWTLKNFLLWWLLLRLAVNTHWQKRYCNMHAIFISLTSLLLPLVPRMKLRTSSQVGNRKLLEENSINISTDVENFVVELEESAKTGILVASDDVLIGVLGIADPLKREASVVIEGLWKMGVIPVMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALATADVGMAIGAGTDVAIEAANYVLMRDNLEDVITAIDLSKRPF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2123 251 PRINTS P-type cation-transporting ATPase superfamily signature 221 233 - -
Ssu5g2123 251 PRINTS P-type cation-transporting ATPase superfamily signature 198 217 - -
Ssu5g2123 251 PRINTS P-type cation-transporting ATPase superfamily signature 123 134 - -
Ssu5g2123 251 PRINTS P-type cation-transporting ATPase superfamily signature 145 155 - -
Ssu5g2123 251 PRINTS P-type cation-transporting ATPase superfamily signature 6 20 - -
Ssu5g2123 251 Gene3D - 132 248 IPR023214 -
Ssu5g2123 251 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 93 248 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g2123 251 PANTHER ATP7, ISOFORM B 1 26 - -
Ssu5g2123 251 PANTHER ATP7, ISOFORM B 81 251 - -
Ssu5g2123 251 SUPERFAMILY HAD-like 5 249 IPR036412 -
Ssu5g2123 251 Pfam haloacid dehalogenase-like hydrolase 2 212 - -
Ssu5g2123 251 Gene3D - 79 131 IPR023299 GO:0000166
Ssu5g2123 251 PRINTS H+-transporting ATPase (proton pump) signature 229 251 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g2123 251 PRINTS H+-transporting ATPase (proton pump) signature 198 214 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g2123 251 PRINTS H+-transporting ATPase (proton pump) signature 170 186 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g2123 251 PANTHER HEAVY METAL P-TYPE ATPASE 1 26 - -
Ssu5g2123 251 PANTHER HEAVY METAL P-TYPE ATPASE 81 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2123 Ssu-Chr5 61421985 61423710 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2123 2 249 Primary Pumps ATPases AT5G44790 59.636 2.34e-92 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2123 K17686 - gmx:100798164 310.457