LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g2121	ATGAGTATATTTCTTCCAGAAGAGTCGTATACTATCATGAGAATCCCACCTCCTGCTCCTCCTCCCACTGTTCCTTCATCAGTTGGAGGCTCCCCTAGGACCCCTACAAAATCATTTTCTCCACCCTTTCCACCTTCATCACCAAAACCACTCTCCACTTCTTTCTCATCAATTCCAAAAATGACAAATCCTTCACCACCTACTCCCCCTCCAACAATACCTGATAGAAAGAATCAAGTACCAGCACCACCTTCCCCTCCTCCAATCCCATATAGAGAGACCccagcaccaccaccacctcctcctccaccaccaATCCCAGGTAGACAAAGCTCAACACCATCACCATCTCCTCCACCAATCCCAAATAAAAAGAACTCAGGAGCAGCACCACCTCCTCCACCAATTCCTCCTAGAAAGAGTCCAgcaccacctcctcctccaccaaAGGCAGGTGGTTTGAAGTCATCATCAAAACCACCACCTACCCCTATTGAAAGTACACCAGGTACCACAAGTAAGCAAGGCAACACTTCAGCTGAGGTAAAACTGAAGCCATTACATTGGGATAAGGTAAATACCAATCTTGATCACTCTATGGTGTGGGACAAAATTGACCGTGGTTCTTTCAGGGTTGATGATGATCTTATGGAATCTCTCTTTGGGTACGCTGCCACCAGCCAAAATGATAATACCACAAAAGTAAATAACTCAATGAATCCTAGCAGGAATGCTTTGGCTCCATCAGCAAATGTTTTCCTTCTTGACCccagaaaatcacaaaatattgCTATTGTTTTGAAATCTCTGGCAGTCTCACGTAAAGATATTATTGAAGCACTCATTGATGGTCAAGGCCTCAACACAGATACCATTGAAAAGTTTGGTAGAGTAGTCCCAACAGAAGAAGAGCAGTCACTTATACTTGCATACGAAGGAGACCCTTCAAAACTTGCTGCCGCTGAATCTTTTCTACATCACATCCTCAAAGCTGTTCCTTCAGCATTTAAGCGCTTGAATGCCTTGCTATTCAGGTTGAATTATGACTCCGAGATTGTAGAAATCAAGGAGTTTCTGCAGGCCCTTGAGCTGGGGTGCAAGGAGCTTCGGAACCAAGGAATGTTTGTGAAGCTTCTTGAAGCAGTGCTTAAAGCTGGAAATCGCATGAATGCAGGTACTCACAGGGGTAATGCTCAAGCTTTCAACCTGGCTTCTCTGAGAAAGCTCTCCGATGTCAAGAGCACTGATGGAAAAACCACATTGCTTCACTTTGTGGTTGAAGAAGTAGTTCGTTCTGAAGGAAAACGTGTTGCTCTTAACCGGGATCGCAGTTTGAGTCGTAGTATCAGTAGGAGCAGCAACAACAGTGGATACTCTCAGAACTCTTCTGCTTCAAATGAACAAAGACAAACACAATATATAACACTAGGATTGCCGGTTGTAGGAGGGATTAGTTCTGAGTTGTCCAACATAAAGAAAGTTGCGGTTACAGATTACAACAATTTTGTTGGTTCGATCTCATCACTCTCGGCCAGGATAGTTGAGATTAGAGAACTTGTTTCCCAGTGTGAAAATGACAAGGGAGGAAACTTTGTGAGAGAAATGAACCATTTTCTTGAAAATGCTGAGGAGGAATTGAGATTAGTGAGGGAAGAGCAAACAAGGACAATGCAGCTTGTGAGAACAACAACAAATTATTATCAAGGAGGAGCTTCAAAAGATAGTGCAGAACAccctctttatttatttgtcatagtTAAGGATTTTTTGGGAATGGTTGATCAAGCATGCATTGAGATTGCTCGTAACATGCAGAAGAGGAAGACACCAAGGTAA	1836	0.4085	MSIFLPEESYTIMRIPPPAPPPTVPSSVGGSPRTPTKSFSPPFPPSSPKPLSTSFSSIPKMTNPSPPTPPPTIPDRKNQVPAPPSPPPIPYRETPAPPPPPPPPPIPGRQSSTPSPSPPPIPNKKNSGAAPPPPPIPPRKSPAPPPPPPKAGGLKSSSKPPPTPIESTPGTTSKQGNTSAEVKLKPLHWDKVNTNLDHSMVWDKIDRGSFRVDDDLMESLFGYAATSQNDNTTKVNNSMNPSRNALAPSANVFLLDPRKSQNIAIVLKSLAVSRKDIIEALIDGQGLNTDTIEKFGRVVPTEEEQSLILAYEGDPSKLAAAESFLHHILKAVPSAFKRLNALLFRLNYDSEIVEIKEFLQALELGCKELRNQGMFVKLLEAVLKAGNRMNAGTHRGNAQAFNLASLRKLSDVKSTDGKTTLLHFVVEEVVRSEGKRVALNRDRSLSRSISRSSNNSGYSQNSSASNEQRQTQYITLGLPVVGGISSELSNIKKVAVTDYNNFVGSISSLSARIVEIRELVSQCENDKGGNFVREMNHFLENAEEELRLVREEQTRTMQLVRTTTNYYQGGASKDSAEHPLYLFVIVKDFLGMVDQACIEIARNMQKRKTPR	611

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g2121	611	SMART	it6_source	174	608	IPR015425	-
	Ssu5g2121	611	MobiDBLite	consensus disorder prediction	13	28	-	-
	Ssu5g2121	611	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	174	611	IPR015425	-
	Ssu5g2121	611	Coils	Coil	532	559	-	-
	Ssu5g2121	611	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	252	608	-	-
	Ssu5g2121	611	Gene3D	Formin, FH2 domain	195	611	IPR042201	-
	Ssu5g2121	611	Pfam	Formin Homology 2 Domain	180	593	IPR015425	-
	Ssu5g2121	611	MobiDBLite	consensus disorder prediction	1	184	-	-
	Ssu5g2121	611	PANTHER	FORMIN-LIKE PROTEIN 4	95	610	-	-
	Ssu5g2121	611	PRINTS	Proline rich extensin signature	61	78	-	-
	Ssu5g2121	611	PRINTS	Proline rich extensin signature	79	104	-	-
	Ssu5g2121	611	PRINTS	Proline rich extensin signature	14	35	-	-
	Ssu5g2121	611	PRINTS	Proline rich extensin signature	35	51	-	-
	Ssu5g2121	611	MobiDBLite	consensus disorder prediction	62	155	-	-
	Ssu5g2121	611	MobiDBLite	consensus disorder prediction	448	467	-	-
	Ssu5g2121	611	PANTHER	FORMIN-RELATED	95	610	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g2121	Ssu-Chr5	61415265	61417186	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g2121	89	609	FH2 protein (formin) Gene Family	AT1G70140	50.916	9.76e-178	521

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g2121	-		-	gmx:100778804	775.778