Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2120 atGGCGCCGAGCACCGGAGACCTCCAACTAACTTCCGCCGGCGCCGGCGACGAATATTCCGACAACCTCGAAGAAGTTCGCCTCCTCGACTCCTACGACAAAAACGACGTCGTCGAGGACGGGACGAAACGGATTCAGGTCAGAATCACCGGCATGACCTGCGCCGCTTGCTCTAACTCCGTCGAGGCCGCTCTCAAGTCCGTTAACGGCGTCACCGACGCCTCCGTTGCTCTTCTTCAGAACAAAGCCGACGTCGTTTTCAACCCGAGCCTCGTCAAGGACGAGGACATTAAGAATGCGATTGAGGACGCAGGTTTCGAGGCGGAGATCTTGCAGGAGTCCGGTGCGGCGGCTCACGGCGGCGCCGGCGTCGTGGTGGGGCAGTTCACTATCGGCGGGATGACCTGTGCGGCGTGTGTGAATTCCGTTGAGGGCATTCTGAGGGGGCTTAATGGAGTGAAAAGAGCGGTGGTGGCTTTGGCTACTTCGTTGGGTGAGGTTGAGTATGATCCCAGCGTGATCAGCAAGGATGATATTGTGGCTGCGATTGAAGACGCTGGTTTCGAGGGTTCGTTTGTGCAGAGTAATGGGCAGGACCAGATTGTGTTGAGGGTTGGCGGTGTGTACTCTTTGGGTGATGCTCGGGTTTTGGAAGCGATGCTGAGTGGCATCAAAGGGGTGAAGCAGTTTCGGTTTGACTCGGTGTTGAACGAGCTTGATGTGGTTTTTGACCCCCAAGTTATCAGTTCGAGGTCATTGGTTGATAGGATCGAATTGGGAAGTAATGGCAAGTTTAAATTACATGTTAGAAATCCTTACTCTAGAATGGCTTCTAAAGATGGTTCAGAGACTTCCACTATGTTTCGGCTTTTTATTTCCAGCCTGTTTCTCAGTATTCCTCTCTTCTTCATGGGGGTGATCTGTCCTCATATACCGTTGATATACTCCTTATTACTTTGGAGATGTGGGCCTTTTCTCATGGGTGATTGGCTGAAGTGGGCGTTGGTGAGTGTGATTCAATTTGTTGTTGGGAAACGCTTCTACAAAGCAGCTGGGAGAGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGGTTGCTTTGGGAACTACAGCCTCTTATATTTATTCAGTCTGTGCTCTTCTGTATGGTGCCCTTACAGGATTTTGGTCTCCCACATACTTTGAAACAAGTGCTATGCTTATAACATTTGTATTGTTGGGCAAGTATTTGGAGTGCCTTGCCAAGGGAAAGACCTCTGATGCCATTAAGAAGCTAGTGGCACTTACTCCTGCCACAGCTTTATTGGTTGTCAAAGATAAAGgTGGTAGAACTATTGAAGAAAGGGAAATAGATTCCTTGCTCGTTCAACCTGGTGACACATTAAAAGTTCTTCCTGGTACAAAGATTCCTGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAGAGTATGGTGACTGGTGAATCTATACCTGTTTCGAAGGAGGTCAATGCATCTGTTATTGGAGGTACAATCAATTTGCATGGTGTCCTTCACATTCAAGCAACCAAAGTAGGATCTGATACAGTTTTGAGTCAGATAATTAGTTTGGTGGAGACAGCCCAGATGTCCAAAGCTCCCATTCAAAAGTTTGCTGATTATGTAGCAAGCATTTTTGTTCCTACAGTTGTAATTTTGGCATTATTGACACTATTGTGTTGGTATATAGCTGGGGCTCTTGGAGCATACCCAGAAGAATGGCTGCCGGAAAATGGAAACCACTTTGTTTTTGCCCTTATGTTTTCAATATCTGTCGTGGTGATTGCATGCCCATGTGCACTTGGTTTGGCAACACCAACTGCTGTAATGGTGGCAACAGGGGTTGGGGCCAACAATGGCGTGTTAATTAAAGGAGGAGACTCCTTGGAAAGGGCTCAGATGGTGAAGTATGTCATATTTGATAAAACAGGGACTCTAACTCAGGGGAAAGCCACTGTTACTGCTGCTAAGGCGTTCACAGGAATGGACCTTGGAGAATTTCTTACTTTGGTGGCTTCTGCTGAGgCTAGCAGTGAACACCCATTGGCAAAAGCAATATTGCAATATGCACgccattttcatttctttgacGAGTCTTCTCCTACCACTGGTACCAAGAATGATGCTGAGGAGGACTTCAAGTCAGGGTGGCTTTATGATGTGTCAGACTTCTCTGCTCTTCCAGGAAGGGGCGTCCAGTGCTTTATAGATGGGAAGCGTATTTTGGTTGGTAACCGGAAGCTGCTGGAGGAAAATAgcataaatatttctaaagaaGTGGAAAATTTTGTTGTAGAGCTGGAAGAAAGTGCAAAGACAGGGATACTGGTAGCATATGATTATGTATTAATTGGAGTCTTAGGGATCGCAGACCCATTAAAGAGAGAAGCTTCTGTTGTTATAGAGGGCCTCTGGAAAATGGGAGTCATCCCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTCGAGCTGTTGCCAAGGAGGTTGGCATTCAGGATGTTAGGGCAGAGGTTATGCCTGCAGGAAAGGCTGATGTTGTTCGTTCATTCCAAAAGGATGGAAGTATAGTTGCAATGGTGGGTGATGGCATCAATGACTCACCAGCATTAGCTGCTGCAGATGTTGGTATGGCAATTGGGGCTGGGACAGATGTTGCAATAGAAGCTGCTAACTATGTGCTGATGAGAGATAACTTGGAAGACGTTATCACAGCCATTGATCTTTCCAAGAAGACATTTTTTCGCATTCGATTGAATTATGTATTCGCGATGGCTTACAATGTCATTGCTATACCAGTTGCTGCTGGGGTATTATTTCCTTTGTTGGGGATCAAGCTCCCACCATGGGTTGCCGGTGCATGCATGGCTCTTTCCTCTGTTAGTGTCGTATGCTCTTCTTTACTTCTGAGAAGATATAGAAAACCCAGACTTACTACAATACTTGAAATAGTTGTAAATTAA 2988 0.4585 MAPSTGDLQLTSAGAGDEYSDNLEEVRLLDSYDKNDVVEDGTKRIQVRITGMTCAACSNSVEAALKSVNGVTDASVALLQNKADVVFNPSLVKDEDIKNAIEDAGFEAEILQESGAAAHGGAGVVVGQFTIGGMTCAACVNSVEGILRGLNGVKRAVVALATSLGEVEYDPSVISKDDIVAAIEDAGFEGSFVQSNGQDQIVLRVGGVYSLGDARVLEAMLSGIKGVKQFRFDSVLNELDVVFDPQVISSRSLVDRIELGSNGKFKLHVRNPYSRMASKDGSETSTMFRLFISSLFLSIPLFFMGVICPHIPLIYSLLLWRCGPFLMGDWLKWALVSVIQFVVGKRFYKAAGRALRNGSTNMDVLVALGTTASYIYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVALTPATALLVVKDKGGRTIEEREIDSLLVQPGDTLKVLPGTKIPADGIVTWGSSYVNESMVTGESIPVSKEVNASVIGGTINLHGVLHIQATKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVILALLTLLCWYIAGALGAYPEEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDSLERAQMVKYVIFDKTGTLTQGKATVTAAKAFTGMDLGEFLTLVASAEASSEHPLAKAILQYARHFHFFDESSPTTGTKNDAEEDFKSGWLYDVSDFSALPGRGVQCFIDGKRILVGNRKLLEENSINISKEVENFVVELEESAKTGILVAYDYVLIGVLGIADPLKREASVVIEGLWKMGVIPVMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDVAIEAANYVLMRDNLEDVITAIDLSKKTFFRIRLNYVFAMAYNVIAIPVAAGVLFPLLGIKLPPWVAGACMALSSVSVVCSSLLLRRYRKPRLTTILEIVVN 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2120 995 CDD HMA 46 109 IPR006121 GO:0046872
Ssu5g2120 995 SUPERFAMILY Calcium ATPase, transduction domain A 448 534 IPR008250 -
Ssu5g2120 995 ProSitePatterns Heavy-metal-associated domain. 131 160 IPR017969 GO:0046872
Ssu5g2120 995 Pfam Heavy-metal-associated domain 47 107 IPR006121 GO:0046872
Ssu5g2120 995 Pfam Heavy-metal-associated domain 129 189 IPR006121 GO:0046872
Ssu5g2120 995 SFLD C1.7: P-type atpase like 630 920 - -
Ssu5g2120 995 Gene3D - 615 926 IPR023214 -
Ssu5g2120 995 ProSitePatterns E1-E2 ATPases phosphorylation site. 650 656 IPR018303 -
Ssu5g2120 995 SUPERFAMILY HAD-like 647 975 IPR036412 -
Ssu5g2120 995 Gene3D - 42 114 - -
Ssu5g2120 995 Pfam haloacid dehalogenase-like hydrolase 644 883 - -
Ssu5g2120 995 ProSitePatterns Heavy-metal-associated domain. 49 79 IPR017969 GO:0046872
Ssu5g2120 995 Gene3D - 127 192 - -
Ssu5g2120 995 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 362 978 IPR027256 GO:0006812|GO:0016021|GO:0019829
Ssu5g2120 995 Gene3D - 416 538 - -
Ssu5g2120 995 SUPERFAMILY HMA, heavy metal-associated domain 125 196 IPR036163 GO:0046872
Ssu5g2120 995 Gene3D - 655 749 IPR023299 GO:0000166
Ssu5g2120 995 Gene3D - 750 800 IPR023299 GO:0000166
Ssu5g2120 995 CDD P-type_ATPase_Cu-like 289 965 - -
Ssu5g2120 995 ProSiteProfiles Heavy-metal-associated domain profile. 126 192 IPR006121 GO:0046872
Ssu5g2120 995 ProSiteProfiles Heavy-metal-associated domain profile. 44 110 IPR006121 GO:0046872
Ssu5g2120 995 PANTHER ATP7, ISOFORM B 3 988 - -
Ssu5g2120 995 TIGRFAM TIGR00003: copper ion binding protein 128 189 IPR006122 GO:0005507
Ssu5g2120 995 TIGRFAM TIGR00003: copper ion binding protein 45 108 IPR006122 GO:0005507
Ssu5g2120 995 SFLD p-type atpase 630 920 IPR044492 -
Ssu5g2120 995 SUPERFAMILY HMA, heavy metal-associated domain 39 113 IPR036163 GO:0046872
Ssu5g2120 995 SUPERFAMILY Calcium ATPase, transmembrane domain M 380 958 IPR023298 -
Ssu5g2120 995 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 741 948 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g2120 995 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 401 667 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g2120 995 ProSiteProfiles Heavy-metal-associated domain profile. 200 258 IPR006121 GO:0046872
Ssu5g2120 995 PRINTS P-type cation-transporting ATPase superfamily signature 869 888 - -
Ssu5g2120 995 PRINTS P-type cation-transporting ATPase superfamily signature 648 662 - -
Ssu5g2120 995 PRINTS P-type cation-transporting ATPase superfamily signature 484 498 - -
Ssu5g2120 995 PRINTS P-type cation-transporting ATPase superfamily signature 794 805 - -
Ssu5g2120 995 PRINTS P-type cation-transporting ATPase superfamily signature 816 826 - -
Ssu5g2120 995 PRINTS P-type cation-transporting ATPase superfamily signature 892 904 - -
Ssu5g2120 995 PANTHER HEAVY METAL P-TYPE ATPASE 3 988 - -
Ssu5g2120 995 Pfam E1-E2 ATPase 430 627 - -
Ssu5g2120 995 SUPERFAMILY HMA, heavy metal-associated domain 195 258 IPR036163 GO:0046872
Ssu5g2120 995 CDD HMA 128 189 IPR006121 GO:0046872
Ssu5g2120 995 PRINTS Copper-transporting ATPase 1 signature 99 119 - -
Ssu5g2120 995 PRINTS Copper-transporting ATPase 1 signature 44 69 - -
Ssu5g2120 995 PRINTS Copper-transporting ATPase 1 signature 70 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2120 Ssu-Chr5 61409047 61414345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2120 1 992 Primary Pumps ATPases AT5G44790 75.746 0.0 1510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2120 K17686 - gmx:100798164 1757.65