Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2116 ATGTCTGGTTTGAAGATGGCTTATGTGCATTACATCGGGAGGTGTCTGGTTTATGATAAGGCGGGGTTGTTTTTCAGGTCCAAGTCAAACCAGTACCCAAACACATCCCTCATCCAAATTGAGGGAGTGAACACCAAAGAAGAGGTAGGATGGTATGCTGGCAAGCGAATGGCGTATATCTACAAGGCTAAGGTGAAAAAGAATGGAAGCCATTACCGCTGCATATGGGGCAAGGTTACAAGGCCTCATGGCAACAGTGGTATTGTTCGCGCAAAATTCAAGTCAAACCTTCCACCCAGATCAATGGGAGCACGGGTAAGAGTATTCATGTATCCAAGTAACATATGA 348 0.454 MSGLKMAYVHYIGRCLVYDKAGLFFRSKSNQYPNTSLIQIEGVNTKEEVGWYAGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGNSGIVRAKFKSNLPPRSMGARVRVFMYPSNI 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2116 115 Gene3D translation elongation factor selb, chain A, domain 4 13 115 IPR038661 -
Ssu5g2116 115 Hamap 50S ribosomal protein L35Ae [rpl35ae]. 17 109 IPR001780 GO:0003735|GO:0005840|GO:0006412
Ssu5g2116 115 PANTHER 60S RIBOSOMAL PROTEIN L35A-1 24 115 - -
Ssu5g2116 115 Pfam Ribosomal protein L35Ae 24 109 IPR001780 GO:0003735|GO:0005840|GO:0006412
Ssu5g2116 115 ProSitePatterns Ribosomal protein L35Ae signature. 77 98 IPR018266 GO:0003735|GO:0005840|GO:0006412
Ssu5g2116 115 PANTHER 60S RIBOSOMAL PROTEIN L35A 24 115 IPR001780 GO:0003735|GO:0005840|GO:0006412
Ssu5g2116 115 SUPERFAMILY Translation proteins 24 109 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2116 Ssu-Chr5 61374415 61374843 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2116 24 115 Cytoplasmic Ribosomal Protein Gene Family AT1G74270 88.043 6.85e-59 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2116 K02917 - gmx:100305958 187.193