Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2101 ATGGATGGTTTGACCCGGACAGATGAACTGGTTTTTGTTTTAGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAACTAGTATATGCGTTTGTAAACTTGATCCTTGTACCACTTCCAGAACCAGAAGCGAGAAGAGCAATGTTTGAGGAACTCCTTCCTCCACAGCCTGACGAGGAACCAATCCCGTATGATTTACTGGTGGATAAGACAGAAGGATATTCGGGGTCAGATATACGATTACTCTGTAAAGAGACAGCAATGCAGCCCTTGAGACGCTTAATGTCACAACTTGAGCAGAGACAGGAGGTGGTGCCTGAAGAAGAGTTGCCAAAAGTTGGGCCAATTAGATCTGAAGATATAGAGACAGCTTTAAGAAACACAAGGCCATCTGCTCATCTCCATGCCCACAAATACGACAAGTTCAACGCTGATTATGGTAGTCAAATACAACAATGA 480 0.4479 MDGLTRTDELVFVLAATNLPWELDAAMLRRLEKLVYAFVNLILVPLPEPEARRAMFEELLPPQPDEEPIPYDLLVDKTEGYSGSDIRLLCKETAMQPLRRLMSQLEQRQEVVPEEELPKVGPIRSEDIETALRNTRPSAHLHAHKYDKFNADYGSQIQQ 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2101 159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 141 IPR027417 -
Ssu5g2101 159 Gene3D - 47 135 - -
Ssu5g2101 159 PANTHER AAA DOMAIN-CONTAINING 1 157 - -
Ssu5g2101 159 Gene3D - 1 149 IPR027417 -
Ssu5g2101 159 Pfam AAA+ lid domain 72 108 IPR041569 -
Ssu5g2101 159 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 2 ISOFORM X1 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2101 Ssu-Chr5 61001946 61003246 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2101 11 106 Calmodulin-binding Proteins AT3G56690 34.694 1.28e-07 48.1