Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2098 ATGGCCGACGAACCAATGCCCACGCGCTGGTCTTTCCAGGACTTCAAATTGTATTACGATGCTAAGTTTGGTAGGAAGAAAGTCGTGGAGAATGGCGAGACTGGTGATAAAGTGTTCAGTAATGGAAGTCCGTTGGGCGTTGCATCCAATGGCAATGGCAATCTGCATGCCAAGAGGGCATCGGAAATGGCTGTTTATGAGCAGTTTCAAAGTGAGGGCCAGAATCAGACTCACACAAATGGTTTTTCGCCAGTCAATATGGATGAAAGGCCGAAGAAGTCTTTGCTTCCACCTTTTGAATCTGCAGAAATGCGAACTTTAGCAGAGAGCCTAAGTAGGGATATCATTCGTGGAAGTCCAGATGTGAAGTGGGAAAGCATCAAGGGGTTAGAGAATGCCAAACGTTTACTGAAAGAGGCTGTTGTGATGCCAATTAAGTATCCCAAGTACTTCACTGGTCTGTTATCACCATGGAAGGGCATCCTCCTTTTTGGCCCACCGGGGACAGGAAAGACAATGCTTGCAAAGGCAGTTGCGACAGAGTGTAAGACTacgttttttaatatttcagcATCATCTGTAGTCAGCAAATGGCGAGGTGATTCAGAGAAGTTAGTGAAAGTGTTATTTGAACTTGCAAGGCATCATGCACCCTCAACAATATTTCTTGACGAAATTGATGCAATCATTAGTCAACGTGGTGAAGCTCGCAGTGAACATGAAGCAAGTAGACGGTTGAAAACTGAGCTTCTCATTCAGATGGATGGTTTGACCCGGACAGATGAACTGGTTTTTGTTTTAGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGAATCCTTGTACCACTTCCAGAACCAGAAGCGAGAAGAGCAATGTTTGAGGAACTCCTTCCTCCACAGCCTGACGAGGAACCAATCCCGTATGATTTACTGGTGGATAAGACAGAAGGATATTCGGGGTCAGATATAAGATTACTCTGTAAAGAGACAGCAATGCAGCCCTTGAGACGCTTAATGTCACAACTTGAGCAGAGACAGGAGGTGGTGCCTGAAGAAGAGTTGCCAAAAGTTGGGCCAATTAGATCTGAAGATATAGAGACAGCTTTAAGAAACACAAGGCCATCTGCTCATCTCCATGCCCACAAATACGACAAGTTCAACGCTGATTATGGTAGTCAAATACAACAATGA 1218 0.4475 MADEPMPTRWSFQDFKLYYDAKFGRKKVVENGETGDKVFSNGSPLGVASNGNGNLHAKRASEMAVYEQFQSEGQNQTHTNGFSPVNMDERPKKSLLPPFESAEMRTLAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRAMFEELLPPQPDEEPIPYDLLVDKTEGYSGSDIRLLCKETAMQPLRRLMSQLEQRQEVVPEEELPKVGPIRSEDIETALRNTRPSAHLHAHKYDKFNADYGSQIQQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2098 405 Pfam ATPase family associated with various cellular activities (AAA) 161 291 IPR003959 GO:0005524|GO:0016887
Ssu5g2098 405 SMART AAA_5 157 294 IPR003593 -
Ssu5g2098 405 Gene3D - 120 395 IPR027417 -
Ssu5g2098 405 Gene3D - 293 381 - -
Ssu5g2098 405 CDD AAA 128 292 - -
Ssu5g2098 405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 386 IPR027417 -
Ssu5g2098 405 MobiDBLite consensus disorder prediction 70 90 - -
Ssu5g2098 405 Pfam AAA+ lid domain 319 354 IPR041569 -
Ssu5g2098 405 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 2 ISOFORM X1 9 403 - -
Ssu5g2098 405 PANTHER AAA DOMAIN-CONTAINING 9 403 - -
Ssu5g2098 405 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2098 Ssu-Chr5 60789834 60801130 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2098 155 364 Calmodulin-binding Proteins AT3G56690 36.150 3.97e-31 124