Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2088 ATGGACTTGAGCGAAGAAATTAGGGCCGCTCACAAGCGAGAATTTGCCGATTTCTTGGATCAAGATGTCGGAAAGGGCATATACATGGACGAAATCAAAGCCCTAATCAACCACAAGCGCCACCGCCTCATTGTCAACATCTCCGATCTCCACAACTTCCGCGACTTGGGTAGCAGGATTCTCAGGAATCCAAGCGAGTACATGCAGTCGTTCTGCGATGCGGTCACGGACGCTGCACGTGCTATTGATCCCAAGTATTTGAAGGAAGGGGAGCAAGTGCTTGTGGGATTTGAAGGCCCTTTTGTTTCTCGGCGAGTCACGCCGAGGGAGCTTCTCTCTGAATTCATAGGTTCTATGGTCTGTGTTGAGGGCATTGTCACCAAATgTTCTCTTGTAAGGCCGAAGGTTGTTAAAAGTGTTCATTTCTGCCCCACCACGGGAAACTTCACTTCTCGTGAATATCGAGATATTACATCCAATTTGGGTTTGCCCACAGGATCTGTTTACCCTACAAGGGATGAAAATGGCAACTTACTTGTGACTGAGTATGGATTGTGCAAATACAAAGATCACCAAACTATGTCCATTCAAGAAGTTCCCGAGAATTCTGCTCCTGGTCAACTCCCTAGAACAGTTGATGTCATTGTAGAAGATGATCTTGTTGATTCTTGCAAGCCTGGAGATCGAGTGGCAATTGTGGGGATATATAAGGCTATTCCAGGGAAAAGCCAAGGCAGTGTGAATGGAGTATTCAGGACTGTACTCATAGCCAACAATGTTTCTCTTCTCAACAAAGAGGCTAATGCACCAATCTACAGTCCTGAAGATctcaaaaacattaaaaagataGCTGAAAGAGATGATACATTTGACCTGCTAAGTAGTTCACTCGCACCTTCTATATATGGGCATTCTTGGATAAAGAAAGCAGTGGTTTTGTTGATGCTTAGTGGAGTGGAGAAAAACTTAAAGAATGGCACTCACTTGCGAGGTGACATTAACATGATGATGGTTGGCGATCCCTCTGTTGCCAAGTCTCAACTCTTAAGAGCAATTATGAACATTGCTCCCTTGGCCATATCAACTACAGGCAGGGGTTCTTCTGGGGTTGGTTTAACCGCTGCAGTTACTTCAGATCAAGAAACAGGGGAAAGAAGGCTAGAAGCAGGGGCAATGGTTCTTGCTGACAGAGGCGTTGTCTGCATTGATGAATTTGACAAGATGAATGATCAAGATCGTGTGGCTATACATGAAGTTATGGAGCAGCAGACTGTAACTATTGCCAAAGCCGGTATCCATGCATCACTTAATGCTCGATGCAGTGTGGTTGCTGCTGCAAATCCCATATATGGAACTTATGATCGTTCATTGACTCCAACCAAAAATATTGGACTCCCAGACTCCTTGCTTTCTCGATTTGATCTACTGTTTATAGTGTTAGATCAAATGGATCCTGATATTGATCGTCACATATCAGAGCATGTTCTTCGTATGCATCGATTTCGTTCTGCCATTGACGGAGTTGAGGCAGCGCTTGTTGGGAGCTCAAGATATGGAAGAGAAGATGAAGCTGATACAGACTCATCTGTCTTTGTCAAATATAACAGAATGTTACATGGGAAGAAAACTGAAAGAGGTCGCAAACGTGATATGCTTacaatcaaatttcttaaaaaatatatccacTATGCTAAGCATAGGATTCAGCCTGAACTGACTGATGAGGCATCTGAGAACATTGCCACAGCCTATGCTGAGCTCAGAAATTCAAGTTCACATGCAAAGACTGGAGGAACACTTCCCATAACCGCCAGAACGTTAGAAACCATAATACGTCTGTCAACAGCTCATGCCAAATTGAAGTTGAGCAGAAAGGTTTCAAAGTCTGATGTTGAAGCTGCTTTGAAGGTTCTCAATTTTGCAATATATCACAAAGAACTGACAGAAATGGAGGAGCGTGAGCAAGAGAGGGAAAGGGAGCTGGACAGGAAGCGTAAGGCTGACCATAATGAAAATGATGGTCCTGACCGTGGTCCTAAAGATAGAAGAAGGTCAACATCAGATGCCATGGAAGTAGATGATACTTCAGCAGCCCAAACTGCTGTCAGACTCACCCCTGAAAGAATTGAAGCATTTAATTCTCTATTTGGTCAGCATATGCGTGCCAACCGCCTGGATCTTATATCTATTGCAGACATAGAGGATGTTGTCAACAGAGGGGCAGATTCCACTTACAGCCGGGCAGATATACTACTCCTATTAGAGAGGTTGCAAGATGACAATAGAGTGATGATAGCATTAGCTGATGAAATGGTGCATATGATATCATAA 2331 0.4316 MDLSEEIRAAHKREFADFLDQDVGKGIYMDEIKALINHKRHRLIVNISDLHNFRDLGSRILRNPSEYMQSFCDAVTDAARAIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSEFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGNFTSREYRDITSNLGLPTGSVYPTRDENGNLLVTEYGLCKYKDHQTMSIQEVPENSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGIYKAIPGKSQGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLSSSLAPSIYGHSWIKKAVVLLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRFRSAIDGVEAALVGSSRYGREDEADTDSSVFVKYNRMLHGKKTERGRKRDMLTIKFLKKYIHYAKHRIQPELTDEASENIATAYAELRNSSSHAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTEMEEREQERERELDRKRKADHNENDGPDRGPKDRRRSTSDAMEVDDTSAAQTAVRLTPERIEAFNSLFGQHMRANRLDLISIADIEDVVNRGADSTYSRADILLLLERLQDDNRVMIALADEMVHMIS 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2088 776 SMART AAA_5 331 484 IPR003593 -
Ssu5g2088 776 Pfam MCM AAA-lid domain 556 639 IPR041562 -
Ssu5g2088 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 656 IPR027417 -
Ssu5g2088 776 ProSitePatterns MCM family signature. 398 406 IPR018525 GO:0003677|GO:0005524|GO:0006260
Ssu5g2088 776 MobiDBLite consensus disorder prediction 649 700 - -
Ssu5g2088 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 442 454 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu5g2088 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 418 431 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu5g2088 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu5g2088 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 330 345 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu5g2088 776 PRINTS Mini-chromosome maintenance (MCM) protein family signature 390 404 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu5g2088 776 PANTHER DNA HELICASE 3 767 - -
Ssu5g2088 776 SUPERFAMILY Nucleic acid-binding proteins 13 259 IPR012340 -
Ssu5g2088 776 MobiDBLite consensus disorder prediction 649 690 - -
Ssu5g2088 776 Gene3D - 271 663 IPR027417 -
Ssu5g2088 776 Pfam MCM OB domain 109 239 IPR033762 -
Ssu5g2088 776 Gene3D - 3 99 - -
Ssu5g2088 776 SMART mcm 104 643 IPR031327 GO:0003677|GO:0005524|GO:0032508
Ssu5g2088 776 Pfam MCM P-loop domain 277 499 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu5g2088 776 ProSiteProfiles MCM family domain profile. 289 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu5g2088 776 Gene3D - 135 189 - -
Ssu5g2088 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 207 219 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Ssu5g2088 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 491 501 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Ssu5g2088 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 630 645 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Ssu5g2088 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 181 195 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Ssu5g2088 776 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 458 468 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Ssu5g2088 776 CDD MCM3 292 641 - -
Ssu5g2088 776 Pfam MCM N-terminal domain 12 83 IPR027925 -
Ssu5g2088 776 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 3 767 IPR031327 GO:0003677|GO:0005524|GO:0032508
Ssu5g2088 776 Coils Coil 644 670 - -
Ssu5g2088 776 Gene3D - 109 239 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2088 Ssu-Chr5 60384218 60389246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2088 1 578 Core DNA Replication Machinery Family AT5G46280 81.897 0.0 975
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2088 K02541 - gmx:100811545 1355.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2088 5 60384218 60389246 Ssu5g2088 5 60384218 60389246 ECH