Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2086 ATGCAGACTCAGGAATATTTTCTCCCGGAGAATATGGTACTTCCTTTGGCAGACGAGGCCATTGATGCTCATATGCATGCTCCACTTGCTTCTGCCTTTGATGCATTTTTACCTCCAGGTGGGAGGCAGATAACACCCTTTGAAAGATTTAAATTGCAACCCTCTGAGGCTTGCCCTAAGAATTTCATTATCTTTGATCAAACAGATCAACGGAACAGGATTATGTTCCATCCTGCAATGACCTACAATTTTAATAGTCCTGGCTTAAATGTTCATGCTACTTGCTCTCAAGAGTTTGAGAAGAATAAAGTCGATCAAAAGGAAAGAGAATTGTCATCTGCTTTTGAAGAAGATCCTAATGACATTGATGCATTGTTGAGCATAGGAGTGGATGAGATGGAAGACTTTGACGAGGAAGAAGTCAGCACAGCAAGGActcatgaaaattatgaaagtttATCTGATACTTGCTCCAGTTACTGCTCACAATCAAGGAAGAAGAGGTCGGCATCCTCTTCTGTACAGAAGTCTTCTGGGGCCGGGGGTTCCTGCCACAACGAAGGGAAACGCCGGGAGATGAAGAGGATGGTGAGGATATTGAGAAGGATTGTACCTGGTGGAGGTAATCAAATGGATACTGTTGCTGTTTTAGATGAAGCTGTTGAATACCTCAAGTCTCTCAAAGTTGAGGTGGAACAATTTGGAGTTGGAccatga 717 0.417 MQTQEYFLPENMVLPLADEAIDAHMHAPLASAFDAFLPPGGRQITPFERFKLQPSEACPKNFIIFDQTDQRNRIMFHPAMTYNFNSPGLNVHATCSQEFEKNKVDQKERELSSAFEEDPNDIDALLSIGVDEMEDFDEEEVSTARTHENYESLSDTCSSYCSQSRKKRSASSSVQKSSGAGGSCHNEGKRREMKRMVRILRRIVPGGGNQMDTVAVLDEAVEYLKSLKVEVEQFGVGP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2086 238 PANTHER TRANSCRIPTION FACTOR BHLH144 1 237 - -
Ssu5g2086 238 SMART finulus 186 233 IPR011598 GO:0046983
Ssu5g2086 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983
Ssu5g2086 238 MobiDBLite consensus disorder prediction 168 182 - -
Ssu5g2086 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 233 IPR036638 GO:0046983
Ssu5g2086 238 PANTHER TRANSCRIPTION FACTOR BHLH145 1 237 IPR037546 -
Ssu5g2086 238 Gene3D - 185 235 IPR036638 GO:0046983
Ssu5g2086 238 Coils Coil 97 117 - -
Ssu5g2086 238 MobiDBLite consensus disorder prediction 168 191 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2086 16 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G29950 42.083 2.90e-43 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2086 - - gmx:100791998 390.578