Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu5g2082 | ATGGCGAAAAAGGCAAAAGGGTCTCCCTCTGCTTCTTCGGCCTCTGCCTCTTCCGGCAAACTAGTGTTGAGGATTAAATCAAACGAGGGAATCGAGAGATCAGTGCGGCAGACTAGGTCAAGAAAGAAACCCAAAGCAAAGCAAAggaagaacaaacaaaagtttgATGCTAAGAAACCGAAGAAACCTCCCACAGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTACGATATAGCAACAGATAAACGTGCTGAATTTGATAGGGCAATGGCAGAATTTAACAAGAAAATGGAAAGCGGCAAGTTTGACGAAACTGATGAGGAATCAGAGTTTGATGAGTAA | 447 | 0.4027 | MAKKAKGSPSASSASASSGKLVLRIKSNEGIERSVRQTRSRKKPKAKQRKNKQKFDAKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATDKRAEFDRAMAEFNKKMESGKFDETDEESEFDE | 148 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu5g2082 | 148 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 14 | 4 | 147 | - | - | |
Ssu5g2082 | 148 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
Ssu5g2082 | 148 | CDD | HMGB-UBF_HMG-box | 60 | 126 | - | - | |
Ssu5g2082 | 148 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 12-RELATED | 4 | 147 | - | - | |
Ssu5g2082 | 148 | SMART | hmgende2 | 59 | 130 | IPR009071 | - | |
Ssu5g2082 | 148 | Pfam | HMG (high mobility group) box | 60 | 129 | IPR009071 | - | |
Ssu5g2082 | 148 | SUPERFAMILY | HMG-box | 52 | 133 | IPR036910 | - | |
Ssu5g2082 | 148 | Gene3D | High mobility group box domain | 55 | 144 | IPR036910 | - | |
Ssu5g2082 | 148 | MobiDBLite | consensus disorder prediction | 8 | 22 | - | - | |
Ssu5g2082 | 148 | MobiDBLite | consensus disorder prediction | 38 | 57 | - | - | |
Ssu5g2082 | 148 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 60 | 129 | IPR009071 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu5g2082 | Ssu-Chr5 | 60292451 | 60296973 | Transposed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | HMG | Ssu5g2082 | HMG_box | 4.6e-18 | CL0114 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu5g2082 | - | - | gmx:100809401 | 201.06 |