Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2082 ATGGCGAAAAAGGCAAAAGGGTCTCCCTCTGCTTCTTCGGCCTCTGCCTCTTCCGGCAAACTAGTGTTGAGGATTAAATCAAACGAGGGAATCGAGAGATCAGTGCGGCAGACTAGGTCAAGAAAGAAACCCAAAGCAAAGCAAAggaagaacaaacaaaagtttgATGCTAAGAAACCGAAGAAACCTCCCACAGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTACGATATAGCAACAGATAAACGTGCTGAATTTGATAGGGCAATGGCAGAATTTAACAAGAAAATGGAAAGCGGCAAGTTTGACGAAACTGATGAGGAATCAGAGTTTGATGAGTAA 447 0.4027 MAKKAKGSPSASSASASSGKLVLRIKSNEGIERSVRQTRSRKKPKAKQRKNKQKFDAKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATDKRAEFDRAMAEFNKKMESGKFDETDEESEFDE 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2082 148 PANTHER HIGH MOBILITY GROUP B PROTEIN 14 4 147 - -
Ssu5g2082 148 MobiDBLite consensus disorder prediction 1 62 - -
Ssu5g2082 148 CDD HMGB-UBF_HMG-box 60 126 - -
Ssu5g2082 148 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 4 147 - -
Ssu5g2082 148 SMART hmgende2 59 130 IPR009071 -
Ssu5g2082 148 Pfam HMG (high mobility group) box 60 129 IPR009071 -
Ssu5g2082 148 SUPERFAMILY HMG-box 52 133 IPR036910 -
Ssu5g2082 148 Gene3D High mobility group box domain 55 144 IPR036910 -
Ssu5g2082 148 MobiDBLite consensus disorder prediction 8 22 - -
Ssu5g2082 148 MobiDBLite consensus disorder prediction 38 57 - -
Ssu5g2082 148 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 60 129 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2082 Ssu-Chr5 60292451 60296973 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Ssu5g2082 HMG_box 4.6e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2082 - - gmx:100809401 201.06