Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2056 ATGTGGTCCCTAAAGATTAGTTTGACTACTATAGTCATAGTCCTTTCCATTGTTTCCATAGTGTCCCATGCTGAAACAAGCTTGGATGTTGAAATTCAAGCTTTGAAAGCTTTCAAGAACTCCATCACTGGTGACCCAAATGGGGCTCTTACAGATTGGGTTGACAGTCACCACCACTGCAACTGGTCTGGCATTGTATGTGCATCTTCAAATCATGTCATTTCAATTTCTCTGGTTAGTCTTCAGCTCCAAGGGCAGATTTCACCATTCCTTGGAAACATTTCAGGCCTTCAGGTTTTTGATATAACTTCAAACTCATTCACTGGGAAACCTGAAAGCCTGCAGTATTTGGATTTAGGTAGCAACTTTTTGAATGGAAGCCTCCCTGACAGCATATTCAACTGCACTTCTTTGTTGGGTATTGCTTTTAATTTCAACAACCTTACTGGCAGAATCCCATCAAACATTCGGAATCTAGTTAACGTTACACAGATTGCAGGTTTTGGAAATAGCTTGGTAGGGTCTATACCTCTTTCCATAGGTCAGTTAGGAGCTTTGCAATCTCTTGATTTTAGCCACAACAAGTTATCAGGTGTAATACCTCGAGAGATTGGAAATCTGACAAATTTAGAGTACCTTGTATTGTTCCAAAATTCCTTGAGTGGGAAAATCCCTTCTGAACTTGCTAAGTGTAGCAAACTTTTACAACTTGAGTTATATGAAAATCAGTTTATTGGGAGTATTCCTCCTGAGCTAGGAAATTTAGTTCAGTTGGAGACATTGAGGTTACATCACAACAACTTGAATTCCACCATTCCATCTTCCATATTCCAGTTGAAATCATTAAAACATTTAGGACTCTCACAGAATAACTTGGAGGGAACAATAACTTCTGAGATTGGATCTATGAATTCCTTGCAAGTTCTAACCcttcatttaaataagtttacGGGGAAGATCCCTTCATCAAtaacaaacttgaaaaacttGACATATCTGTCAATGAGCCAGAATCTCCTTTCAGGTGAACTTCCTTCAAACTTGGGTGTGCTTCATAATTTGAAGTTTCTGGTTTTGAACTCCAACTACTTTCATGGATCCATTCCCCCTAGCATTACCAATTGTACTAGTCTAGTAAATGTAAGTTTGTCTTTTAATGCTTTAACTGGGAAAATTCCTGAGGGCTTTTCAAGGTCGCCTAATCTTACTTTCCTGTCTTTTGCATCCAACAAACTGACTGGAGAAATCCCAGATGACCTCTATAACTGCTCAAATCTTAGCACTCTAAGTTTGGCAGTGAACAACTTCAGTGGATTGATAAAATCAGGTATCCAGAACCTGTCTAAACTCCTGCGCCTGCAGCTGAACGCAAATTCTTTCATAGGACCAATTCCACCAGGGATTGGAAACTTGAATCAACTCATCACTTTATCCCTTTCTGAAAATAAGTTTTCAGGTCAAATCCCTCCAGAACTGTCCAAACTTTCTCACCTTCAGGGGCTCGCTCTATATGACAATGTATTAGAAGGTACAATACCTGATAAACTCTCTGAATTAAAAGAACTAACCAAACTTTTGCTGCATCAAAACAAGTTGGCTGGTCAAATACCTGATTGTATGTCAAAGCTTAAGATGCTTTCATATTTGGACCTTCATCACAACAAACTCAATGGGTCCATTCCAAGAAGCATGGGGCAGCTTAATCAGCTTTTAGTTTTGGATCTCTCTCACAACCTCCTCACCGGATCAATTCCTGGAGATGTCATTGCACACTTCAAAGACATGCAGATGTATCTTAACCTTTCTTACAACCACTTGGTTGGAAATGTTCCAACTGAGATGGGCATGTTGGAAATGATACAAGCTATtgatatttcaaacaataatcTTTCAGGTTTCATTCCCAAAACACTTGCTGGGTGCAGAAATCTGTTCAATCTTGATTTTTCAGGAAACGATATTTCAGGCCCTATTCCTGCAGAAGCTTTTAGTCACATGGACTTGCTTGAAAGCTTAAACGTCTCAAGAAATCATATAGAAGGTGAAATCCCTGAAATATTGGCAGAACTTGATCATCTTAATTCCCTTGATCTTTCTCAGAATAACTTGAAGGGAACTATTCCTGAGGGCTTTGCCAACCTTTCCAACTTGGTGCATCTCAACCTTTCCTTCAATCAACTTGAAGGTCCAGTACCTAAGACCGGAATATTTGCACACATCAATGCATCTAGTATGATGGGAAACCAGGATCTTTGTGGAGCAAAGTTCCTATTGCCATGCAGAGAGACAAAACATCCACTATCCAAGAAGAGCATATCTATTATTGCTGCAGATATTAGTGCCAATCATGGACCAGATTACAGTTCAGCATTGGCACTTAAAAGGTTCGATCCAAAGGACTTGGAAAATGCCACTGGTTTTTTCAGCGCAGACAGCATCATTGGTGCTAGCAGTTTGAGCACAGTTTACAAGGGTCAAATGGAAGATGGCCAGGTTGTAGCCATAAAAAGATTGAATTTGCAACAATTCTCTGCAAATACTGACAAGATCTTCAAGAGAGAAGCCAACACCTTGAGCCAGATGAGACATAGGAATTTGGTCAAGGTACTTGGATATGCCTGGGAGAGTGGGAAAATGAGGCTTTGGTTCTAG 2652 0.3925 MWSLKISLTTIVIVLSIVSIVSHAETSLDVEIQALKAFKNSITGDPNGALTDWVDSHHHCNWSGIVCASSNHVISISLVSLQLQGQISPFLGNISGLQVFDITSNSFTGKPESLQYLDLGSNFLNGSLPDSIFNCTSLLGIAFNFNNLTGRIPSNIRNLVNVTQIAGFGNSLVGSIPLSIGQLGALQSLDFSHNKLSGVIPREIGNLTNLEYLVLFQNSLSGKIPSELAKCSKLLQLELYENQFIGSIPPELGNLVQLETLRLHHNNLNSTIPSSIFQLKSLKHLGLSQNNLEGTITSEIGSMNSLQVLTLHLNKFTGKIPSSITNLKNLTYLSMSQNLLSGELPSNLGVLHNLKFLVLNSNYFHGSIPPSITNCTSLVNVSLSFNALTGKIPEGFSRSPNLTFLSFASNKLTGEIPDDLYNCSNLSTLSLAVNNFSGLIKSGIQNLSKLLRLQLNANSFIGPIPPGIGNLNQLITLSLSENKFSGQIPPELSKLSHLQGLALYDNVLEGTIPDKLSELKELTKLLLHQNKLAGQIPDCMSKLKMLSYLDLHHNKLNGSIPRSMGQLNQLLVLDLSHNLLTGSIPGDVIAHFKDMQMYLNLSYNHLVGNVPTEMGMLEMIQAIDISNNNLSGFIPKTLAGCRNLFNLDFSGNDISGPIPAEAFSHMDLLESLNVSRNHIEGEIPEILAELDHLNSLDLSQNNLKGTIPEGFANLSNLVHLNLSFNQLEGPVPKTGIFAHINASSMMGNQDLCGAKFLLPCRETKHPLSKKSISIIAADISANHGPDYSSALALKRFDPKDLENATGFFSADSIIGASSLSTVYKGQMEDGQVVAIKRLNLQQFSANTDKIFKREANTLSQMRHRNLVKVLGYAWESGKMRLWF 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2056 883 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 260 340 - -
Ssu5g2056 883 SUPERFAMILY L domain-like 57 223 - -
Ssu5g2056 883 Pfam Protein tyrosine and serine/threonine kinase 811 878 IPR001245 GO:0004672|GO:0006468
Ssu5g2056 883 PRINTS Leucine-rich repeat signature 186 199 - -
Ssu5g2056 883 PRINTS Leucine-rich repeat signature 690 703 - -
Ssu5g2056 883 Gene3D Ribonuclease Inhibitor 394 490 IPR032675 -
Ssu5g2056 883 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 335 777 - -
Ssu5g2056 883 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 127 266 - -
Ssu5g2056 883 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 260 340 - -
Ssu5g2056 883 Gene3D Ribonuclease Inhibitor 233 393 IPR032675 -
Ssu5g2056 883 Gene3D Ribonuclease Inhibitor 496 764 IPR032675 -
Ssu5g2056 883 Pfam Leucine rich repeat 257 315 IPR001611 GO:0005515
Ssu5g2056 883 Pfam Leucine rich repeat 521 580 IPR001611 GO:0005515
Ssu5g2056 883 Pfam Leucine rich repeat 669 727 IPR001611 GO:0005515
Ssu5g2056 883 SMART LRR_typ_2 327 349 IPR003591 -
Ssu5g2056 883 SMART LRR_typ_2 519 543 IPR003591 -
Ssu5g2056 883 SMART LRR_typ_2 714 739 IPR003591 -
Ssu5g2056 883 SMART LRR_typ_2 351 375 IPR003591 -
Ssu5g2056 883 SMART LRR_typ_2 567 591 IPR003591 -
Ssu5g2056 883 SMART LRR_typ_2 255 279 IPR003591 -
Ssu5g2056 883 SMART LRR_typ_2 471 495 IPR003591 -
Ssu5g2056 883 SMART LRR_typ_2 690 713 IPR003591 -
Ssu5g2056 883 SMART LRR_typ_2 183 207 IPR003591 -
Ssu5g2056 883 SMART LRR_typ_2 112 135 IPR003591 -
Ssu5g2056 883 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Ssu5g2056 883 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 779 880 - -
Ssu5g2056 883 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 1 110 - -
Ssu5g2056 883 ProSiteProfiles Protein kinase domain profile. 808 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2056 883 Gene3D Ribonuclease Inhibitor 164 232 IPR032675 -
Ssu5g2056 883 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 110 - -
Ssu5g2056 883 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 779 880 - -
Ssu5g2056 883 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 335 777 - -
Ssu5g2056 883 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 127 266 - -
Ssu5g2056 883 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515
Ssu5g2056 883 Pfam Leucine Rich Repeat 113 135 IPR001611 GO:0005515
Ssu5g2056 883 Gene3D Ribonuclease Inhibitor 27 163 IPR032675 -
Ssu5g2056 883 SMART LRR_sd22_2 543 569 - -
Ssu5g2056 883 SMART LRR_sd22_2 327 350 - -
Ssu5g2056 883 SMART LRR_sd22_2 690 716 - -
Ssu5g2056 883 SMART LRR_sd22_2 183 209 - -
Ssu5g2056 883 SUPERFAMILY L domain-like 453 732 - -
Ssu5g2056 883 SUPERFAMILY Protein kinase-like (PK-like) 786 878 IPR011009 -
Ssu5g2056 883 Gene3D Phosphorylase Kinase; domain 1 778 882 - -
Ssu5g2056 883 SUPERFAMILY L domain-like 169 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2056 Ssu-Chr5 59093978 59096807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2056 6 880 Receptor kinase-like Gene Family AT5G46330 50.426 0.0 874
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Ssu5g2056 PK_Tyr_Ser-Thr 3.5e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2056 K13420 - gmx:100817960 1487.24