Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2055 ATGGAGAATGGGAATTTGGATAGCATCATACATGGCAAAGGGGTAGATCAGTCTGTGATCTCTAGGTGGACCTTGTCTGAAAGAGTCCGAGTTTTCATTTCTATTGCTAGTGCATTGGATTATTTGCACTCTGGTTATGATTCTCCCATTATACACTGTGATTTAAAGCCTTCTAACATCCTTTTAGATAGAGACTGGGAAGCTCATGTCAGTGACTTTGGGACAGCTCGAATCCTTGGTCTTCATCTGCAGGATGGTGGTAGTACCCTTTCCTCGTCAGCAGCTTTGCAAGGCACAGTTGGCTATATGGCACCAGAATTTGCCTACATGAGGAAAGTAACGACTAAAGTGGATGTGTTCTGCTTCGGTATCATAGTAATGGAGTTTCTAACAAAAAGAAGGCCAACAGGACTCTCAGAAGAGAATGGTTTGCCAATCACTTTGCGTGAAGTAGTGGCGAAAGCCCTCGCAAATGGAATAGAACAACTTGTCAATATTGTGGACCCTTTGTTGACCTGGAATGTTACAGAAGACTGTGACGAAGGATTGGTAGAGCTCTTTACGCTATCTTTGTGTTGCACCCTCCCTGATCCTGAACATCGACCCAATATGAATGAGGTGTTATCTACCCTTGTGAAGCTTCAAACAACACTGTCTTGTTAA 663 0.4329 MENGNLDSIIHGKGVDQSVISRWTLSERVRVFISIASALDYLHSGYDSPIIHCDLKPSNILLDRDWEAHVSDFGTARILGLHLQDGGSTLSSSAALQGTVGYMAPEFAYMRKVTTKVDVFCFGIIVMEFLTKRRPTGLSEENGLPITLREVVAKALANGIEQLVNIVDPLLTWNVTEDCDEGLVELFTLSLCCTLPDPEHRPNMNEVLSTLVKLQTTLSC 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2055 220 SUPERFAMILY Protein kinase-like (PK-like) 1 212 IPR011009 -
Ssu5g2055 220 Pfam Protein kinase domain 2 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2055 220 ProSiteProfiles Protein kinase domain profile. 1 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2055 220 PIRSF ILK 1 220 - -
Ssu5g2055 220 Gene3D Transferase(Phosphotransferase) domain 1 1 219 - -
Ssu5g2055 220 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 215 - -
Ssu5g2055 220 SMART serkin_6 1 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2055 220 ProSitePatterns Serine/Threonine protein kinases active-site signature. 50 62 IPR008271 GO:0004672|GO:0006468
Ssu5g2055 220 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 1 215 - -
Ssu5g2055 220 Coils Coil 211 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2055 Ssu-Chr5 59092391 59093972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2055 1 215 Receptor kinase-like Gene Family AT5G46330 52.315 1.84e-68 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Ssu5g2055 Pkinase 9.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2055 K13420 - gmx:100788119 395.971