Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2053 ATGGCTGCCTCTTCCATGGCCCTCTCCTCCCCATCCTTCGCCGGCAAGGCCGTGAAGCTCTCCCCATCAGCCCCAGAAGTTGGGAGGGTCAGCATGAGGAAGACCGTCACCAAGCAGGTCTCTTCCGGAAGCCCATGGTACGGCCCAGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCCCCGTCCTACCTCACTGGCGAGTTCCCAGGTGACTACGGTTGGGACACTGCTGGGCTTTCCGCCGACCCAGAAACCTTCGCCAAGAACCGTGAGCTCGAGGTCATTCACAGCAGGTGGGCCATGCTCGGAGCTTTGGGCTGCGTCTTCCCCGAGCTCTTGGCCCGCAACGGTGTCAAATTCGGCGAGGCCGTGTGGTTCAAGGCCGGGTCCCAGATCTTCAGCGAGGGTGGGCTTGACTACTTGGGCAACCCAAGCCTGATCCACGCTCAGAGCATCCTTGCCATCTGGGCCGTCCAGGTTGTCTTGATGGGTGCCGTTGAGGGTTACCGTATTGCCGGTGGGCCCCTTGGTGAGGTGACTGACCCACTTTACCCAGGTGGCAGCTTCGACCCACTGGGCCTTGCCGATGACCCAGAGGCTTTTGCTGAGTTGAAGGTGAAGGAAATCAAGAACGGCAGATTAGCCATGTTCTCAATGTTCGGGTTCTTCGTTCAGGCCATTGTGACCGGAAAGGGTCCACTCGAGAACCTTGCCGATCACCTTGCTGACCCAGTCAACAACAACGCATGGGCCTATGCCACCAACTTCGTCCCCGGAAAGTGA 789 0.5957 MAASSMALSSPSFAGKAVKLSPSAPEVGRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2053 262 Pfam Chlorophyll A-B binding protein 62 228 IPR022796 -
Ssu5g2053 262 Gene3D Chlorophyll a/b binding protein domain 53 255 - -
Ssu5g2053 262 SUPERFAMILY Chlorophyll a-b binding protein 45 259 - -
Ssu5g2053 262 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 262 IPR001344 GO:0009765|GO:0016020
Ssu5g2053 262 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 1 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2053 Ssu-Chr5 59089371 59090159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2053 1 262 Chloroplast and Mitochondria Gene Families AT1G29930 89.139 3.27e-173 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2053 K08912 - gmx:100805310 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2053 5 59089371 59090159 Ssu5g2053 5 59089371 59090159 ECH