Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2045 ATGTCTGTTGAACCTAAAGAACTTTACTACCAGGACCTTGTCCTAGACCACAATCAGCAGGGCACAGGAGGATCTAATACCATGTACGAAAAGAACTTTTCCTCTATTCCTGCAGGAAACCAAAAGCCAACAATAGAAGGAGGAGATGTAGGAGGTAGTGGTGGCAGTGAAACCCTTGCGACCCTTAACTCGTCTatctcttcttcatcttccgaAGCTGGCGCTGAAGAAGATTCGGGAAAGAGCAAAAAAGATAGGCAGGTGAAAGCAGAAGAAGGAGGAGAAAACACTAAGAAAggGAACAAGGATaagaagaaaggagagaagAAGCAAAAGGAGCCAAGGTTTGCCTTCATGACCAAGAGTGAGGTTGATCACCTTGAAGATGGCTACAGATGGAGAAAATATGGACAGAAAGCTGTCAAGAATAGCCCTTATCCAAGGAGCTACTACAGGTGCACTACCCAGAAATGCACAGTGAAGAAACGCGTGGAGAGGTCATTTCAAGACCCAACCACTGTGATAACAACGTATGAAGGTCAGCACAACCATCCGGTCCCCACATCGCTTAGAGGGAATGCGGCCGCAGGAATGTTCACACCTTCTTTGTTAGCCACACCAACTCCACTCGCAGCCGGGTCAAACTTCCCTCAAGATCTCTTCCTTCACATgcatcaccaccactaccacaacACCCTCTTCACCACACAATCAACAAACACTGCTACTAGTGCTACTGCTAGCGTTGCTCCTCCCTCCATTTACTCTTCACATAACAACATTAACAACTCTCTTCTTCACAACCAGTATCTTCCTTCAGATCAATACGGCCTCCTTCAAGACATAGTCCCTTCCATGTTCCACAACAAGACCCACCACCAGAATTAA 888 0.4313 MSVEPKELYYQDLVLDHNQQGTGGSNTMYEKNFSSIPAGNQKPTIEGGDVGGSGGSETLATLNSSISSSSSEAGAEEDSGKSKKDRQVKAEEGGENTKKGNKDKKKGEKKQKEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPTTVITTYEGQHNHPVPTSLRGNAAAGMFTPSLLATPTPLAAGSNFPQDLFLHMHHHHYHNTLFTTQSTNTATSATASVAPPSIYSSHNNINNSLLHNQYLPSDQYGLLQDIVPSMFHNKTHHQN 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2045 295 SUPERFAMILY WRKY DNA-binding domain 119 187 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g2045 295 Gene3D WRKY domain 111 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g2045 295 PANTHER WRKY TRANSCRIPTION FACTOR 81 32 287 - -
Ssu5g2045 295 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 32 287 IPR044810 GO:0003700
Ssu5g2045 295 MobiDBLite consensus disorder prediction 14 117 - -
Ssu5g2045 295 Pfam WRKY DNA -binding domain 128 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g2045 295 MobiDBLite consensus disorder prediction 15 41 - -
Ssu5g2045 295 MobiDBLite consensus disorder prediction 76 117 - -
Ssu5g2045 295 MobiDBLite consensus disorder prediction 56 75 - -
Ssu5g2045 295 ProSiteProfiles WRKY domain profile. 122 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g2045 295 SMART WRKY_cls 127 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2045 Ssu-Chr5 58965781 58967339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2045 77 287 WRKY Transcription Factor Family AT4G18170 53.302 1.16e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu5g2045 WRKY 1.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2045 - - gmx:100787050 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2045 5 58965781 58967339 Ssu5g2045 5 58965781 58967339 ECH