Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2044 ATGGAAAAGGAGCCCCTGCTCCCATATTTCAGCCCCAGAAAGAAGCctccaccattgccaccactgTGTCCCTTGCCAGAACACGATGAAATCGTTCTTCCAATGACCCCTTTGGAATTCAAGGACCGTCTCATCTTCGGTCCTTCTTCTGCTTCCCCAAGGGACCCTTCGCCCTTGGCTGATGCCTTAACACTTCCCCACAATTCCCCAAgatgttcttcttcttccccacAGGACTATGCATCACCACCGCTATTTGATTcacaactacaacaacaacaacaccaacaacagcTTTCTTCTTGGCTCCTTGACCCCAATTACTCATGGCGCAAAACAAACCTTCATCGCTCCAAAACTGCACCAGCCATGGCTGTGATCAGCGATTTCAACCCCCAATCCAACGTGCCAAGACCCCAGTTCGGTAGCCAGAGTATTGTGCGCCAGGGTTTTATTCTTCTTGTTCTTTATTTGGCGTTAGGTGTCGTCATTTATTGGTTTAATCGTCATAATTTTACAGCTACCGAGACCCATCCTATAGTTGATGCATTGTATTTTTGTATAGTGACAATGTGCACAATAGGGTACGGTGACATTACTCCCAATAGTACAGCCACTAAGCTTTTCTCTATATTGTTTGTGTTGGTGGGGTTTGGATTTATAGACATATTGTTGAGCGGGATGGTTAGCTATGTGCTTGATTTGCAGGAGAATCATATGTTGAGGGCAGTGAAGGGGAGGGGTGAGAAGGATGTGAAGTCCTATATAATTGACGTGAAGAAAGGGAGGATGAGGATTCGGTTGAAGGTGGCGCTGGCGTTGGGGGTTGTGGTGCTTTGTATTGGGATAGGTGTGGGGGTTATGCATTTTGTGGAGAGGCTTGGATGGTTggattctttttatctttcggTTATGTCGGTTACGACGGTTGGTTATGGAGACCACGCGTTCAAGACCTTGCACGGTCGGATCTTTGCTGCGATTTGGTTGCTCGTGTCAACGCTTGCGGTGGCTCGGGCGTTCCTCTATTTGGCTGAGGCAAGAGTGGATAAGCGGCATAGGAGGATGGCAAAGTGGATTCTTGGTCAGGATATGACTGTTTCTGAGTTCCTTGCTGCAGACATAGACAATAATGGCTTCGTGAGTAAATCGGAATATGTTATATACAAGCTCAAGGAGATGGGAAAAGTATCTGAGAAGGACATCATGCTGGTTAGTGAGAAGTTTGATAGACTAGATGCTGGCAACTGTGGAAAAATAACACTTGCTGATCTTATGGAGAGTCATAATTGA 1293 0.43 MEKEPLLPYFSPRKKPPPLPPLCPLPEHDEIVLPMTPLEFKDRLIFGPSSASPRDPSPLADALTLPHNSPRCSSSSPQDYASPPLFDSQLQQQQHQQQLSSWLLDPNYSWRKTNLHRSKTAPAMAVISDFNPQSNVPRPQFGSQSIVRQGFILLVLYLALGVVIYWFNRHNFTATETHPIVDALYFCIVTMCTIGYGDITPNSTATKLFSILFVLVGFGFIDILLSGMVSYVLDLQENHMLRAVKGRGEKDVKSYIIDVKKGRMRIRLKVALALGVVVLCIGIGVGVMHFVERLGWLDSFYLSVMSVTTVGYGDHAFKTLHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRRMAKWILGQDMTVSEFLAADIDNNGFVSKSEYVIYKLKEMGKVSEKDIMLVSEKFDRLDAGNCGKITLADLMESHN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2044 430 ProSitePatterns EF-hand calcium-binding domain. 374 386 IPR018247 -
Ssu5g2044 430 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 93 425 IPR003280 GO:0005267|GO:0016020|GO:0071805
Ssu5g2044 430 SUPERFAMILY Voltage-gated potassium channels 260 366 - -
Ssu5g2044 430 MobiDBLite consensus disorder prediction 67 90 - -
Ssu5g2044 430 MobiDBLite consensus disorder prediction 46 90 - -
Ssu5g2044 430 Gene3D - 145 245 - -
Ssu5g2044 430 Gene3D - 338 430 - -
Ssu5g2044 430 SUPERFAMILY EF-hand 369 427 IPR011992 -
Ssu5g2044 430 Pfam Ion channel 152 232 IPR013099 -
Ssu5g2044 430 Pfam Ion channel 276 345 IPR013099 -
Ssu5g2044 430 PRINTS Two pore domain K+ channel signature 189 217 IPR003280 GO:0005267|GO:0016020|GO:0071805
Ssu5g2044 430 PRINTS Two pore domain K+ channel signature 308 317 IPR003280 GO:0005267|GO:0016020|GO:0071805
Ssu5g2044 430 SUPERFAMILY Voltage-gated potassium channels 145 232 - -
Ssu5g2044 430 MobiDBLite consensus disorder prediction 1 22 - -
Ssu5g2044 430 Gene3D - 275 337 - -
Ssu5g2044 430 PANTHER TWO-PORE POTASSIUM CHANNEL 3 93 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2044 Ssu-Chr5 58907761 58919597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2044 4 427 Ion Channels AT4G18160 64.434 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2044 K05389 - gmx:100804249 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2044 5 58907761 58919597 Ssu5g2044 5 58907761 58919597 ECH