Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2041 ATGGGTTTCACCTTCACCACCATGACCCTGAACCTGCTCCTCCTAATGGCCATGGTGGCCACCAACATCCTCTCCCTCTACCATCTCTCCTCCACCCTCCAATCCCCCAAATCCCCCAAACCACCCCCACCGGTCCCCGACCAACTCCTCCACCAGCTCCACACCATACGCGCCACCATCAACCACCTCACGCGCCTCCAGAACACTAACCCCGCCAGAAAATCCACCGTGCCCTCAGATCTACTCCTATACTCACACCTCTCCCCAATAGCCTCCTCGTGCCACAACCACCCGGAGCTCCTCCACAAGTACATGACCTACACGCCCTTCTCCCTCTGCCCCTCCGACTCCGACCTCGCCGAATCCCTAATCCTCCGCGGCTGCCACCCCCTCCCCCGCCGCCGCTGCTTCTCCCGAACGCCGCCGAAGCCTCCCGCCGCCAACTCCCTCCCTCAGAACCCCTTCCCCTCCTCCCTCCCCGACGCCGCCGTCATCTGGGACCGTTACACCTGCAAATCGTTCGATTGCCTCAACAAACAAAACCCTAACCTCGGTTTCGAGCCCTCGCGCGACGCCTCGAGGTTCGACTCGTACAGGAGCGACCTGGATCTCCCGATCAACCAGCTGCTCCAGATCGCGAAGGCCGCGAGGTCGGTGCTCCGGCTCGGGCTCGACGTCGGCGGCGGCACGGGGTCCTTCGCCGCCGCGATGAAGGTCCGCAACGTGACGGTGGTGACCACGACGATGAACGTGGCGGCGCCGCACAGCGAGGCCGCGGCGCTCAGGGGGCTGGTGCCGCTGCACGTGCCGCTGCAGCAGCGGCTGCCGCTCTTCGACGGCGTCGTGGATCTGGTGCGGTGCGGGCGCGCCGTGAACCGGTGGATTCCCGTGACCGTGATGGAGTTTCTGCTGTTCGACGTGGATAGGGTGTTGAGGGGAGGGGGGTACCTTTGGGTGGACCACTTTTTCAGCAAAGGGGCGGACCTCGAGAAGGTGTATGCGCCCTTGATTGGGAAATTGGGGTACAAGAAGGTGAAGTGGGCGACCGGGAATAAGACCGATGCGGGTGGCGTCAAGAATGGGGAAGTTTACTTGACTGCGTTGCTGCAGAAGCCTGTGTCCAGATAG 1128 0.6321 MGFTFTTMTLNLLLLMAMVATNILSLYHLSSTLQSPKSPKPPPPVPDQLLHQLHTIRATINHLTRLQNTNPARKSTVPSDLLLYSHLSPIASSCHNHPELLHKYMTYTPFSLCPSDSDLAESLILRGCHPLPRRRCFSRTPPKPPAANSLPQNPFPSSLPDAAVIWDRYTCKSFDCLNKQNPNLGFEPSRDASRFDSYRSDLDLPINQLLQIAKAARSVLRLGLDVGGGTGSFAAAMKVRNVTVVTTTMNVAAPHSEAAALRGLVPLHVPLQQRLPLFDGVVDLVRCGRAVNRWIPVTVMEFLLFDVDRVLRGGGYLWVDHFFSKGADLEKVYAPLIGKLGYKKVKWATGNKTDAGGVKNGEVYLTALLQKPVSR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2041 375 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 206 317 IPR004159 GO:0008168
Ssu5g2041 375 Gene3D Vaccinia Virus protein VP39 189 358 IPR029063 -
Ssu5g2041 375 PANTHER EXPRESSED PROTEIN 6 374 - -
Ssu5g2041 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 202 347 IPR029063 -
Ssu5g2041 375 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED 6 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2041 Ssu-Chr5 58883750 58884877 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2041 - - gmx:100816366 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2041 5 58883750 58884877 Ssu5g2041 5 58883750 58884877 ECH
Ssu5g2041 5 58883750 58884877 Ssu1g0044 1 1913057 1917191 PCT