Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2026 aTGGCAGACAATGCAGAACGCACCACTGGGCTATGTCTGGGACTGGGAATGGGACGGCAAGTCCTAAAAAAGGAGAAGCAGAAAGAGAACAAGCTTGTGGTGTGCCTAGACTTTGCGTTTGAGCTTTGTCTAGAAGGGGAAGCCATTAACGTGAATCATAATAAGGCAGACAGAATCAGCTCGGAGAGAACGCATGAGGGACACGAGTACCACAATGAAAAGAGCAGTGATTCTGATAACAGCAACAACGGCTGCAGAAAGACACTGGGGCTTACCAAGGAGCAATCAGCCATGCTTGAGAACAGCTTCAAACTGCTTAGCACTCTTAATCCGGTCCAGAAACAAGCACTTGCTGatcaattgaatttaaaaactagacaaGTTGAAGTTTGGTTTCAGAACAGAAAAGCTAGAAATCCTGAAGTGGACTCTGATCAGCTGCCAAGGCTAGAGTGA 456 0.4474 MADNAERTTGLCLGLGMGRQVLKKEKQKENKLVVCLDFAFELCLEGEAINVNHNKADRISSERTHEGHEYHNEKSSDSDNSNNGCRKTLGLTKEQSAMLENSFKLLSTLNPVQKQALADQLNLKTRQVEVWFQNRKARNPEVDSDQLPRLE 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2026 151 MobiDBLite consensus disorder prediction 54 87 - -
Ssu5g2026 151 Gene3D - 91 138 - -
Ssu5g2026 151 PANTHER - 7 138 - -
Ssu5g2026 151 SUPERFAMILY Homeodomain-like 74 138 IPR009057 -
Ssu5g2026 151 SMART HOX_1 85 146 IPR001356 GO:0003677
Ssu5g2026 151 CDD homeodomain 86 138 IPR001356 GO:0003677
Ssu5g2026 151 Pfam Homeodomain 91 138 IPR001356 GO:0003677
Ssu5g2026 151 MobiDBLite consensus disorder prediction 56 76 - -
Ssu5g2026 151 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Ssu5g2026 151 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 7 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2026 Ssu-Chr5 58342780 58347214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2026 9 139 Homeobox Transcription Factor Family AT4G37790 37.059 6.65e-22 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Ssu5g2026 Homeodomain 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2026 K09338 - gmx:100812222 179.489